Gene : Thecc1EG003239 T. cacao v1.1
Defline:  (1 of 15) PTHR10178//PTHR10178:SF309 - GAG/POL/ENV POLYPROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2315
Name:  ? Thecc1EG003239 Secondary Identifier:  ? PAC:27435952
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG003239 0.5kb upstream 0.5kb upstream 9455 true scaffold_1: 21036406-21045860 Theobroma cacao
Thecc1EG003239 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 21036406-21036905 Theobroma cacao
Thecc1EG003239 0.5kb downstream 0.5kb downstream 9455 true scaffold_1: 21036906-21046360 Theobroma cacao
Thecc1EG003239 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 21045861-21046360 Theobroma cacao
Thecc1EG003239 1.0kb upstream 1.0kb upstream 9955 true scaffold_1: 21035906-21045860 Theobroma cacao
Thecc1EG003239 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 21035906-21036905 Theobroma cacao
Thecc1EG003239 1.0kb downstream 1.0kb downstream 9955 true scaffold_1: 21036906-21046860 Theobroma cacao
Thecc1EG003239 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 21045861-21046860 Theobroma cacao
Thecc1EG003239 2.0kb upstream 2.0kb upstream 10955 true scaffold_1: 21034906-21045860 Theobroma cacao
Thecc1EG003239 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 21034906-21036905 Theobroma cacao
Thecc1EG003239 2.0kb downstream 2.0kb downstream 10955 true scaffold_1: 21036906-21047860 Theobroma cacao
Thecc1EG003239 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 21045861-21047860 Theobroma cacao
Thecc1EG003239 5.0kb upstream 5.0kb upstream 13955 true scaffold_1: 21031906-21045860 Theobroma cacao
Thecc1EG003239 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 21031906-21036905 Theobroma cacao
Thecc1EG003239 5.0kb downstream 5.0kb downstream 13955 true scaffold_1: 21036906-21050860 Theobroma cacao
Thecc1EG003239 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 21045861-21050860 Theobroma cacao
Thecc1EG003239 10.0kb upstream 10.0kb upstream 18955 true scaffold_1: 21026906-21045860 Theobroma cacao
Thecc1EG003239 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 21026906-21036905 Theobroma cacao
Thecc1EG003239 10.0kb downstream 10.0kb downstream 18955 true scaffold_1: 21036906-21055860 Theobroma cacao
Thecc1EG003239 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 21045861-21055860 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823880 5264 Brassicales-Malvales View MSA
124319934 5266 SBM View MSA
124168432 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain