Gene : Thecc1EG004328 T. cacao v1.1
Defline:  (1 of 3) PF00665//PF13456 - Integrase core domain (rve) // Reverse transcriptase-like (RVT_3) Genomic Order:  2737
Name:  ? Thecc1EG004328 Secondary Identifier:  ? PAC:27435866
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG004328 0.5kb upstream 0.5kb upstream 4608 true scaffold_1: 31012003-31016610 Theobroma cacao
Thecc1EG004328 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 31012003-31012502 Theobroma cacao
Thecc1EG004328 0.5kb downstream 0.5kb downstream 4608 true scaffold_1: 31012503-31017110 Theobroma cacao
Thecc1EG004328 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 31016611-31017110 Theobroma cacao
Thecc1EG004328 1.0kb upstream 1.0kb upstream 5108 true scaffold_1: 31011503-31016610 Theobroma cacao
Thecc1EG004328 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 31011503-31012502 Theobroma cacao
Thecc1EG004328 1.0kb downstream 1.0kb downstream 5108 true scaffold_1: 31012503-31017610 Theobroma cacao
Thecc1EG004328 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 31016611-31017610 Theobroma cacao
Thecc1EG004328 2.0kb upstream 2.0kb upstream 6108 true scaffold_1: 31010503-31016610 Theobroma cacao
Thecc1EG004328 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 31010503-31012502 Theobroma cacao
Thecc1EG004328 2.0kb downstream 2.0kb downstream 6108 true scaffold_1: 31012503-31018610 Theobroma cacao
Thecc1EG004328 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 31016611-31018610 Theobroma cacao
Thecc1EG004328 5.0kb upstream 5.0kb upstream 9108 true scaffold_1: 31007503-31016610 Theobroma cacao
Thecc1EG004328 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 31007503-31012502 Theobroma cacao
Thecc1EG004328 5.0kb downstream 5.0kb downstream 9108 true scaffold_1: 31012503-31021610 Theobroma cacao
Thecc1EG004328 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 31016611-31021610 Theobroma cacao
Thecc1EG004328 10.0kb upstream 10.0kb upstream 14108 true scaffold_1: 31002503-31016610 Theobroma cacao
Thecc1EG004328 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 31002503-31012502 Theobroma cacao
Thecc1EG004328 10.0kb downstream 10.0kb downstream 14108 true scaffold_1: 31012503-31026610 Theobroma cacao
Thecc1EG004328 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 31016611-31026610 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823914 5264 Brassicales-Malvales View MSA
124319967 5266 SBM View MSA
124168459 5268 Malvidae View MSA
124038207 5270 Rosid View MSA
123753005 5271 Pentapetalae View MSA
122774912 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain