Protein Family : 124168459

Method ID:  5268 Method Name:  Malvidae
Sequence Alignment:  View MSA Member Count:  23
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23 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
Thecc1EG003737 (1 of 131) PF00665 - Integrase core domain (rve) T. cacao v1.1 552341   scaffold_1: 26158397-26710737
Thecc1EG004093 (1 of 131) PF00665 - Integrase core domain (rve) T. cacao v1.1 1922   scaffold_1: 29135408-29137329
Thecc1EG004328 (1 of 3) PF00665//PF13456 - Integrase core domain (rve) // Reverse transcriptase-like (RVT_3) T. cacao v1.1 4108   scaffold_1: 31012503-31016610
Thecc1EG046262 (1 of 131) PF00665 - Integrase core domain (rve) T. cacao v1.1 2269   scaffold_184: 2-2270
Thecc1EG008034 (1 of 7) 2.7.7.49//2.7.7.7//3.1.13.2//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Exoribonuclease H // Ribonuclease H / RNase H T. cacao v1.1 1825   scaffold_2: 10625712-10627536
Thecc1EG010987 (1 of 4) PF00078//PF00665//PF13456 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Reverse transcriptase-like (RVT_3) T. cacao v1.1 8162   scaffold_2: 37167170-37175331
Thecc1EG012304 (1 of 11) PF00078//PF13456 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Reverse transcriptase-like (RVT_3) T. cacao v1.1 4679   scaffold_3: 2125756-2130434
Thecc1EG012620 (1 of 230) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H T. cacao v1.1 1064   scaffold_3: 4326405-4327468
Thecc1EG012814 (1 of 230) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H T. cacao v1.1 10804   scaffold_3: 6223707-6234510
Thecc1EG014031 (1 of 131) PF00665 - Integrase core domain (rve) T. cacao v1.1 23102   scaffold_3: 19340858-19363959
Thecc1EG016264 (1 of 4) PF00078//PF00665//PF13456 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Reverse transcriptase-like (RVT_3) T. cacao v1.1 3089   scaffold_3: 32126079-32129167
Thecc1EG018990 (1 of 131) PF00665 - Integrase core domain (rve) T. cacao v1.1 64424   scaffold_4: 19434336-19498759
Thecc1EG018975 (1 of 230) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H T. cacao v1.1 1084   scaffold_4: 19324428-19325511
Thecc1EG019238 (1 of 7) 2.7.7.49//2.7.7.7//3.1.13.2//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Exoribonuclease H // Ribonuclease H / RNase H T. cacao v1.1 2058   scaffold_4: 21211155-21213212
Thecc1EG020600 (1 of 4) PF00078//PF00665//PF13456 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Reverse transcriptase-like (RVT_3) T. cacao v1.1 7339   scaffold_4: 29336703-29344041
Thecc1EG022674 (1 of 7) 2.7.7.49//2.7.7.7//3.1.13.2//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Exoribonuclease H // Ribonuclease H / RNase H T. cacao v1.1 17117   scaffold_5: 6450464-6467580
Thecc1EG025982 (1 of 6) PF00078//PF00665//PF13456 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Reverse transcriptase-like (RVT_3) T. cacao v1.1 4567   scaffold_5: 35848061-35852627
Thecc1EG028282 (1 of 230) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H T. cacao v1.1 2245   scaffold_6: 13251525-13253769
Thecc1EG029732 (1 of 230) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H T. cacao v1.1 1289   scaffold_6: 24076316-24077604
Thecc1EG032605 (1 of 7) 2.7.7.49//2.7.7.7//3.1.13.2//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Exoribonuclease H // Ribonuclease H / RNase H T. cacao v1.1 1928   scaffold_7: 12548075-12550002
Thecc1EG034704 (1 of 230) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H T. cacao v1.1 2000   scaffold_8: 4394034-4396033
Thecc1EG037531 (1 of 3) PF00665//PF13456 - Integrase core domain (rve) // Reverse transcriptase-like (RVT_3) T. cacao v1.1 15591   scaffold_9: 3969581-3985171
Thecc1EG039866 (1 of 131) PF00665 - Integrase core domain (rve) T. cacao v1.1 2677   scaffold_9: 24137722-24140398

23 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Thecc1EG039866t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG037531t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG004328t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG032605t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG012814t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG034704t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG004093t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG008034t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG019238t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG012304t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG028282t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG010987t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG012620t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG046262t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG022674t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG003737t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG025982t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG016264t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG018975t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG020600t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG018990t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG029732t1 T. cacao v1.1 124168459   23 5268 Malvidae
Thecc1EG014031t1 T. cacao v1.1 124168459   23 5268 Malvidae