Gene : Thecc1EG037531 T. cacao v1.1
Defline:  (1 of 3) PF00665//PF13456 - Integrase core domain (rve) // Reverse transcriptase-like (RVT_3) Genomic Order:  732
Name:  ? Thecc1EG037531 Secondary Identifier:  ? PAC:27426684
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG037531 0.5kb upstream 0.5kb upstream 16091 true scaffold_9: 3969581-3985671 Theobroma cacao
Thecc1EG037531 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 3985172-3985671 Theobroma cacao
Thecc1EG037531 0.5kb downstream 0.5kb downstream 16091 true scaffold_9: 3969081-3985171 Theobroma cacao
Thecc1EG037531 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 3969081-3969580 Theobroma cacao
Thecc1EG037531 1.0kb upstream 1.0kb upstream 16591 true scaffold_9: 3969581-3986171 Theobroma cacao
Thecc1EG037531 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 3985172-3986171 Theobroma cacao
Thecc1EG037531 1.0kb downstream 1.0kb downstream 16591 true scaffold_9: 3968581-3985171 Theobroma cacao
Thecc1EG037531 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 3968581-3969580 Theobroma cacao
Thecc1EG037531 2.0kb upstream 2.0kb upstream 17591 true scaffold_9: 3969581-3987171 Theobroma cacao
Thecc1EG037531 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 3985172-3987171 Theobroma cacao
Thecc1EG037531 2.0kb downstream 2.0kb downstream 17591 true scaffold_9: 3967581-3985171 Theobroma cacao
Thecc1EG037531 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 3967581-3969580 Theobroma cacao
Thecc1EG037531 5.0kb upstream 5.0kb upstream 20591 true scaffold_9: 3969581-3990171 Theobroma cacao
Thecc1EG037531 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 3985172-3990171 Theobroma cacao
Thecc1EG037531 5.0kb downstream 5.0kb downstream 20591 true scaffold_9: 3964581-3985171 Theobroma cacao
Thecc1EG037531 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 3964581-3969580 Theobroma cacao
Thecc1EG037531 10.0kb upstream 10.0kb upstream 25591 true scaffold_9: 3969581-3995171 Theobroma cacao
Thecc1EG037531 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 3985172-3995171 Theobroma cacao
Thecc1EG037531 10.0kb downstream 10.0kb downstream 25591 true scaffold_9: 3959581-3985171 Theobroma cacao
Thecc1EG037531 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 3959581-3969580 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823914 5264 Brassicales-Malvales View MSA
124319967 5266 SBM View MSA
124168459 5268 Malvidae View MSA
124038207 5270 Rosid View MSA
123753005 5271 Pentapetalae View MSA
122774912 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain