Gene : Thecc1EG016264 T. cacao v1.1
Defline:  (1 of 4) PF00078//PF00665//PF13456 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Reverse transcriptase-like (RVT_3) Genomic Order:  2756
Name:  ? Thecc1EG016264 Secondary Identifier:  ? PAC:27447713
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG016264 0.5kb upstream 0.5kb upstream 3589 true scaffold_3: 32126079-32129667 Theobroma cacao
Thecc1EG016264 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 32129168-32129667 Theobroma cacao
Thecc1EG016264 0.5kb downstream 0.5kb downstream 3589 true scaffold_3: 32125579-32129167 Theobroma cacao
Thecc1EG016264 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 32125579-32126078 Theobroma cacao
Thecc1EG016264 1.0kb upstream 1.0kb upstream 4089 true scaffold_3: 32126079-32130167 Theobroma cacao
Thecc1EG016264 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 32129168-32130167 Theobroma cacao
Thecc1EG016264 1.0kb downstream 1.0kb downstream 4089 true scaffold_3: 32125079-32129167 Theobroma cacao
Thecc1EG016264 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 32125079-32126078 Theobroma cacao
Thecc1EG016264 2.0kb upstream 2.0kb upstream 5089 true scaffold_3: 32126079-32131167 Theobroma cacao
Thecc1EG016264 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 32129168-32131167 Theobroma cacao
Thecc1EG016264 2.0kb downstream 2.0kb downstream 5089 true scaffold_3: 32124079-32129167 Theobroma cacao
Thecc1EG016264 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 32124079-32126078 Theobroma cacao
Thecc1EG016264 5.0kb upstream 5.0kb upstream 8089 true scaffold_3: 32126079-32134167 Theobroma cacao
Thecc1EG016264 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 32129168-32134167 Theobroma cacao
Thecc1EG016264 5.0kb downstream 5.0kb downstream 8089 true scaffold_3: 32121079-32129167 Theobroma cacao
Thecc1EG016264 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 32121079-32126078 Theobroma cacao
Thecc1EG016264 10.0kb upstream 10.0kb upstream 13089 true scaffold_3: 32126079-32139167 Theobroma cacao
Thecc1EG016264 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 32129168-32139167 Theobroma cacao
Thecc1EG016264 10.0kb downstream 10.0kb downstream 13089 true scaffold_3: 32116079-32129167 Theobroma cacao
Thecc1EG016264 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 32116079-32126078 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823914 5264 Brassicales-Malvales View MSA
124319967 5266 SBM View MSA
124168459 5268 Malvidae View MSA
124038207 5270 Rosid View MSA
123753005 5271 Pentapetalae View MSA
122774912 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain