Gene : Thecc1EG014031 T. cacao v1.1
Defline:  (1 of 131) PF00665 - Integrase core domain (rve) Genomic Order:  924
Name:  ? Thecc1EG014031 Secondary Identifier:  ? PAC:27451089
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG014031 0.5kb upstream 0.5kb upstream 23602 true scaffold_3: 19340858-19364459 Theobroma cacao
Thecc1EG014031 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 19363960-19364459 Theobroma cacao
Thecc1EG014031 0.5kb downstream 0.5kb downstream 23602 true scaffold_3: 19340358-19363959 Theobroma cacao
Thecc1EG014031 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 19340358-19340857 Theobroma cacao
Thecc1EG014031 1.0kb upstream 1.0kb upstream 24102 true scaffold_3: 19340858-19364959 Theobroma cacao
Thecc1EG014031 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 19363960-19364959 Theobroma cacao
Thecc1EG014031 1.0kb downstream 1.0kb downstream 24102 true scaffold_3: 19339858-19363959 Theobroma cacao
Thecc1EG014031 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 19339858-19340857 Theobroma cacao
Thecc1EG014031 2.0kb upstream 2.0kb upstream 25102 true scaffold_3: 19340858-19365959 Theobroma cacao
Thecc1EG014031 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 19363960-19365959 Theobroma cacao
Thecc1EG014031 2.0kb downstream 2.0kb downstream 25102 true scaffold_3: 19338858-19363959 Theobroma cacao
Thecc1EG014031 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 19338858-19340857 Theobroma cacao
Thecc1EG014031 5.0kb upstream 5.0kb upstream 28102 true scaffold_3: 19340858-19368959 Theobroma cacao
Thecc1EG014031 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 19363960-19368959 Theobroma cacao
Thecc1EG014031 5.0kb downstream 5.0kb downstream 28102 true scaffold_3: 19335858-19363959 Theobroma cacao
Thecc1EG014031 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 19335858-19340857 Theobroma cacao
Thecc1EG014031 10.0kb upstream 10.0kb upstream 33102 true scaffold_3: 19340858-19373959 Theobroma cacao
Thecc1EG014031 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 19363960-19373959 Theobroma cacao
Thecc1EG014031 10.0kb downstream 10.0kb downstream 33102 true scaffold_3: 19330858-19363959 Theobroma cacao
Thecc1EG014031 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 19330858-19340857 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823914 5264 Brassicales-Malvales View MSA
124319967 5266 SBM View MSA
124168459 5268 Malvidae View MSA
124038207 5270 Rosid View MSA
123753005 5271 Pentapetalae View MSA
122774912 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain