Gene : Thecc1EG020600 T. cacao v1.1
Defline:  (1 of 4) PF00078//PF00665//PF13456 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Reverse transcriptase-like (RVT_3) Genomic Order:  2323
Name:  ? Thecc1EG020600 Secondary Identifier:  ? PAC:27453554
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG020600 0.5kb upstream 0.5kb upstream 7839 true scaffold_4: 29336703-29344541 Theobroma cacao
Thecc1EG020600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 29344042-29344541 Theobroma cacao
Thecc1EG020600 0.5kb downstream 0.5kb downstream 7839 true scaffold_4: 29336203-29344041 Theobroma cacao
Thecc1EG020600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 29336203-29336702 Theobroma cacao
Thecc1EG020600 1.0kb upstream 1.0kb upstream 8339 true scaffold_4: 29336703-29345041 Theobroma cacao
Thecc1EG020600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 29344042-29345041 Theobroma cacao
Thecc1EG020600 1.0kb downstream 1.0kb downstream 8339 true scaffold_4: 29335703-29344041 Theobroma cacao
Thecc1EG020600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 29335703-29336702 Theobroma cacao
Thecc1EG020600 2.0kb upstream 2.0kb upstream 9339 true scaffold_4: 29336703-29346041 Theobroma cacao
Thecc1EG020600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 29344042-29346041 Theobroma cacao
Thecc1EG020600 2.0kb downstream 2.0kb downstream 9339 true scaffold_4: 29334703-29344041 Theobroma cacao
Thecc1EG020600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 29334703-29336702 Theobroma cacao
Thecc1EG020600 5.0kb upstream 5.0kb upstream 12339 true scaffold_4: 29336703-29349041 Theobroma cacao
Thecc1EG020600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 29344042-29349041 Theobroma cacao
Thecc1EG020600 5.0kb downstream 5.0kb downstream 12339 true scaffold_4: 29331703-29344041 Theobroma cacao
Thecc1EG020600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 29331703-29336702 Theobroma cacao
Thecc1EG020600 10.0kb upstream 10.0kb upstream 17339 true scaffold_4: 29336703-29354041 Theobroma cacao
Thecc1EG020600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 29344042-29354041 Theobroma cacao
Thecc1EG020600 10.0kb downstream 10.0kb downstream 17339 true scaffold_4: 29326703-29344041 Theobroma cacao
Thecc1EG020600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 29326703-29336702 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823914 5264 Brassicales-Malvales View MSA
124319967 5266 SBM View MSA
124168459 5268 Malvidae View MSA
124038207 5270 Rosid View MSA
123753005 5271 Pentapetalae View MSA
122774912 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain