Gene : Thecc1EG012304 T. cacao v1.1
Defline:  (1 of 11) PF00078//PF13456 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Reverse transcriptase-like (RVT_3) Genomic Order:  305
Name:  ? Thecc1EG012304 Secondary Identifier:  ? PAC:27451289
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG012304 0.5kb upstream 0.5kb upstream 5179 true scaffold_3: 2125256-2130434 Theobroma cacao
Thecc1EG012304 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2125256-2125755 Theobroma cacao
Thecc1EG012304 0.5kb downstream 0.5kb downstream 5179 true scaffold_3: 2125756-2130934 Theobroma cacao
Thecc1EG012304 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2130435-2130934 Theobroma cacao
Thecc1EG012304 1.0kb upstream 1.0kb upstream 5679 true scaffold_3: 2124756-2130434 Theobroma cacao
Thecc1EG012304 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2124756-2125755 Theobroma cacao
Thecc1EG012304 1.0kb downstream 1.0kb downstream 5679 true scaffold_3: 2125756-2131434 Theobroma cacao
Thecc1EG012304 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2130435-2131434 Theobroma cacao
Thecc1EG012304 2.0kb upstream 2.0kb upstream 6679 true scaffold_3: 2123756-2130434 Theobroma cacao
Thecc1EG012304 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2123756-2125755 Theobroma cacao
Thecc1EG012304 2.0kb downstream 2.0kb downstream 6679 true scaffold_3: 2125756-2132434 Theobroma cacao
Thecc1EG012304 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2130435-2132434 Theobroma cacao
Thecc1EG012304 5.0kb upstream 5.0kb upstream 9679 true scaffold_3: 2120756-2130434 Theobroma cacao
Thecc1EG012304 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2120756-2125755 Theobroma cacao
Thecc1EG012304 5.0kb downstream 5.0kb downstream 9679 true scaffold_3: 2125756-2135434 Theobroma cacao
Thecc1EG012304 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2130435-2135434 Theobroma cacao
Thecc1EG012304 10.0kb upstream 10.0kb upstream 14679 true scaffold_3: 2115756-2130434 Theobroma cacao
Thecc1EG012304 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2115756-2125755 Theobroma cacao
Thecc1EG012304 10.0kb downstream 10.0kb downstream 14679 true scaffold_3: 2125756-2140434 Theobroma cacao
Thecc1EG012304 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2130435-2140434 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823914 5264 Brassicales-Malvales View MSA
124319967 5266 SBM View MSA
124168459 5268 Malvidae View MSA
124038207 5270 Rosid View MSA
123753005 5271 Pentapetalae View MSA
122774912 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain