Gene : Thecc1EG004883 T. cacao v1.1
Defline:  (1 of 47) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  3179
Name:  ? Thecc1EG004883 Secondary Identifier:  ? PAC:27434055
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG004883 0.5kb upstream 0.5kb upstream 1669 true scaffold_1: 33930495-33932163 Theobroma cacao
Thecc1EG004883 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 33931664-33932163 Theobroma cacao
Thecc1EG004883 0.5kb downstream 0.5kb downstream 1669 true scaffold_1: 33929995-33931663 Theobroma cacao
Thecc1EG004883 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 33929995-33930494 Theobroma cacao
Thecc1EG004883 1.0kb upstream 1.0kb upstream 2169 true scaffold_1: 33930495-33932663 Theobroma cacao
Thecc1EG004883 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 33931664-33932663 Theobroma cacao
Thecc1EG004883 1.0kb downstream 1.0kb downstream 2169 true scaffold_1: 33929495-33931663 Theobroma cacao
Thecc1EG004883 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 33929495-33930494 Theobroma cacao
Thecc1EG004883 2.0kb upstream 2.0kb upstream 3169 true scaffold_1: 33930495-33933663 Theobroma cacao
Thecc1EG004883 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 33931664-33933663 Theobroma cacao
Thecc1EG004883 2.0kb downstream 2.0kb downstream 3169 true scaffold_1: 33928495-33931663 Theobroma cacao
Thecc1EG004883 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 33928495-33930494 Theobroma cacao
Thecc1EG004883 5.0kb upstream 5.0kb upstream 6169 true scaffold_1: 33930495-33936663 Theobroma cacao
Thecc1EG004883 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 33931664-33936663 Theobroma cacao
Thecc1EG004883 5.0kb downstream 5.0kb downstream 6169 true scaffold_1: 33925495-33931663 Theobroma cacao
Thecc1EG004883 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 33925495-33930494 Theobroma cacao
Thecc1EG004883 10.0kb upstream 10.0kb upstream 11169 true scaffold_1: 33930495-33941663 Theobroma cacao
Thecc1EG004883 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 33931664-33941663 Theobroma cacao
Thecc1EG004883 10.0kb downstream 10.0kb downstream 11169 true scaffold_1: 33920495-33931663 Theobroma cacao
Thecc1EG004883 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 33920495-33930494 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841248 5264 Brassicales-Malvales View MSA
124350615 5266 SBM View MSA
124253184 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain