Gene : Thecc1EG044162 T. cacao v1.1
Defline:  (1 of 58) PTHR11439//PTHR11439:SF192 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED Genomic Order:  1089
Name:  ? Thecc1EG044162 Secondary Identifier:  ? PAC:27443013
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG044162 0.5kb upstream 0.5kb upstream 10433 true scaffold_10r: 14165022-14175454 Theobroma cacao
Thecc1EG044162 0.5kb upstream 0.5kb upstream 500 false scaffold_10r: 14174955-14175454 Theobroma cacao
Thecc1EG044162 0.5kb downstream 0.5kb downstream 10433 true scaffold_10r: 14164522-14174954 Theobroma cacao
Thecc1EG044162 0.5kb downstream 0.5kb downstream 500 false scaffold_10r: 14164522-14165021 Theobroma cacao
Thecc1EG044162 1.0kb upstream 1.0kb upstream 10933 true scaffold_10r: 14165022-14175954 Theobroma cacao
Thecc1EG044162 1.0kb upstream 1.0kb upstream 1000 false scaffold_10r: 14174955-14175954 Theobroma cacao
Thecc1EG044162 1.0kb downstream 1.0kb downstream 10933 true scaffold_10r: 14164022-14174954 Theobroma cacao
Thecc1EG044162 1.0kb downstream 1.0kb downstream 1000 false scaffold_10r: 14164022-14165021 Theobroma cacao
Thecc1EG044162 2.0kb upstream 2.0kb upstream 11933 true scaffold_10r: 14165022-14176954 Theobroma cacao
Thecc1EG044162 2.0kb upstream 2.0kb upstream 2000 false scaffold_10r: 14174955-14176954 Theobroma cacao
Thecc1EG044162 2.0kb downstream 2.0kb downstream 11933 true scaffold_10r: 14163022-14174954 Theobroma cacao
Thecc1EG044162 2.0kb downstream 2.0kb downstream 2000 false scaffold_10r: 14163022-14165021 Theobroma cacao
Thecc1EG044162 5.0kb upstream 5.0kb upstream 14933 true scaffold_10r: 14165022-14179954 Theobroma cacao
Thecc1EG044162 5.0kb upstream 5.0kb upstream 5000 false scaffold_10r: 14174955-14179954 Theobroma cacao
Thecc1EG044162 5.0kb downstream 5.0kb downstream 14933 true scaffold_10r: 14160022-14174954 Theobroma cacao
Thecc1EG044162 5.0kb downstream 5.0kb downstream 5000 false scaffold_10r: 14160022-14165021 Theobroma cacao
Thecc1EG044162 10.0kb upstream 10.0kb upstream 19933 true scaffold_10r: 14165022-14184954 Theobroma cacao
Thecc1EG044162 10.0kb upstream 10.0kb upstream 10000 false scaffold_10r: 14174955-14184954 Theobroma cacao
Thecc1EG044162 10.0kb downstream 10.0kb downstream 19933 true scaffold_10r: 14155022-14174954 Theobroma cacao
Thecc1EG044162 10.0kb downstream 10.0kb downstream 10000 false scaffold_10r: 14155022-14165021 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841161 5264 Brassicales-Malvales View MSA
124351377 5266 SBM View MSA
124253923 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain