Gene : Thecc1EG044877 T. cacao v1.1
Defline:  (1 of 2) PF00078//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) Genomic Order:  1448
Name:  ? Thecc1EG044877 Secondary Identifier:  ? PAC:27442147
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG044877 0.5kb upstream 0.5kb upstream 8770 true scaffold_10r: 20171195-20179964 Theobroma cacao
Thecc1EG044877 0.5kb upstream 0.5kb upstream 500 false scaffold_10r: 20179465-20179964 Theobroma cacao
Thecc1EG044877 0.5kb downstream 0.5kb downstream 8770 true scaffold_10r: 20170695-20179464 Theobroma cacao
Thecc1EG044877 0.5kb downstream 0.5kb downstream 500 false scaffold_10r: 20170695-20171194 Theobroma cacao
Thecc1EG044877 1.0kb upstream 1.0kb upstream 9270 true scaffold_10r: 20171195-20180464 Theobroma cacao
Thecc1EG044877 1.0kb upstream 1.0kb upstream 1000 false scaffold_10r: 20179465-20180464 Theobroma cacao
Thecc1EG044877 1.0kb downstream 1.0kb downstream 9270 true scaffold_10r: 20170195-20179464 Theobroma cacao
Thecc1EG044877 1.0kb downstream 1.0kb downstream 1000 false scaffold_10r: 20170195-20171194 Theobroma cacao
Thecc1EG044877 2.0kb upstream 2.0kb upstream 10270 true scaffold_10r: 20171195-20181464 Theobroma cacao
Thecc1EG044877 2.0kb upstream 2.0kb upstream 2000 false scaffold_10r: 20179465-20181464 Theobroma cacao
Thecc1EG044877 2.0kb downstream 2.0kb downstream 10270 true scaffold_10r: 20169195-20179464 Theobroma cacao
Thecc1EG044877 2.0kb downstream 2.0kb downstream 2000 false scaffold_10r: 20169195-20171194 Theobroma cacao
Thecc1EG044877 5.0kb upstream 5.0kb upstream 13270 true scaffold_10r: 20171195-20184464 Theobroma cacao
Thecc1EG044877 5.0kb upstream 5.0kb upstream 5000 false scaffold_10r: 20179465-20184464 Theobroma cacao
Thecc1EG044877 5.0kb downstream 5.0kb downstream 13270 true scaffold_10r: 20166195-20179464 Theobroma cacao
Thecc1EG044877 5.0kb downstream 5.0kb downstream 5000 false scaffold_10r: 20166195-20171194 Theobroma cacao
Thecc1EG044877 10.0kb upstream 10.0kb upstream 18270 true scaffold_10r: 20171195-20189464 Theobroma cacao
Thecc1EG044877 10.0kb upstream 10.0kb upstream 10000 false scaffold_10r: 20179465-20189464 Theobroma cacao
Thecc1EG044877 10.0kb downstream 10.0kb downstream 18270 true scaffold_10r: 20161195-20179464 Theobroma cacao
Thecc1EG044877 10.0kb downstream 10.0kb downstream 10000 false scaffold_10r: 20161195-20171194 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain