Gene : Thecc1EG044857 T. cacao v1.1
Defline:  (1 of 4) PF13961//PF14223 - Domain of unknown function (DUF4219) (DUF4219) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  1443
Name:  ? Thecc1EG044857 Secondary Identifier:  ? PAC:27443868
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG044857 0.5kb upstream 0.5kb upstream 1276 true scaffold_10r: 19911090-19912365 Theobroma cacao
Thecc1EG044857 0.5kb upstream 0.5kb upstream 500 false scaffold_10r: 19911090-19911589 Theobroma cacao
Thecc1EG044857 0.5kb downstream 0.5kb downstream 1276 true scaffold_10r: 19911590-19912865 Theobroma cacao
Thecc1EG044857 0.5kb downstream 0.5kb downstream 500 false scaffold_10r: 19912366-19912865 Theobroma cacao
Thecc1EG044857 1.0kb upstream 1.0kb upstream 1776 true scaffold_10r: 19910590-19912365 Theobroma cacao
Thecc1EG044857 1.0kb upstream 1.0kb upstream 1000 false scaffold_10r: 19910590-19911589 Theobroma cacao
Thecc1EG044857 1.0kb downstream 1.0kb downstream 1776 true scaffold_10r: 19911590-19913365 Theobroma cacao
Thecc1EG044857 1.0kb downstream 1.0kb downstream 1000 false scaffold_10r: 19912366-19913365 Theobroma cacao
Thecc1EG044857 2.0kb upstream 2.0kb upstream 2776 true scaffold_10r: 19909590-19912365 Theobroma cacao
Thecc1EG044857 2.0kb upstream 2.0kb upstream 2000 false scaffold_10r: 19909590-19911589 Theobroma cacao
Thecc1EG044857 2.0kb downstream 2.0kb downstream 2776 true scaffold_10r: 19911590-19914365 Theobroma cacao
Thecc1EG044857 2.0kb downstream 2.0kb downstream 2000 false scaffold_10r: 19912366-19914365 Theobroma cacao
Thecc1EG044857 5.0kb upstream 5.0kb upstream 5776 true scaffold_10r: 19906590-19912365 Theobroma cacao
Thecc1EG044857 5.0kb upstream 5.0kb upstream 5000 false scaffold_10r: 19906590-19911589 Theobroma cacao
Thecc1EG044857 5.0kb downstream 5.0kb downstream 5776 true scaffold_10r: 19911590-19917365 Theobroma cacao
Thecc1EG044857 5.0kb downstream 5.0kb downstream 5000 false scaffold_10r: 19912366-19917365 Theobroma cacao
Thecc1EG044857 10.0kb upstream 10.0kb upstream 10776 true scaffold_10r: 19901590-19912365 Theobroma cacao
Thecc1EG044857 10.0kb upstream 10.0kb upstream 10000 false scaffold_10r: 19901590-19911589 Theobroma cacao
Thecc1EG044857 10.0kb downstream 10.0kb downstream 10776 true scaffold_10r: 19911590-19922365 Theobroma cacao
Thecc1EG044857 10.0kb downstream 10.0kb downstream 10000 false scaffold_10r: 19912366-19922365 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123838027 5264 Brassicales-Malvales View MSA
124350809 5266 SBM View MSA
124249328 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain