Gene : Thecc1EG009549 T. cacao v1.1
Defline:  (1 of 2) PF00078//PF00665//PF03732//PF08284 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) Genomic Order:  2217
Name:  ? Thecc1EG009549 Secondary Identifier:  ? PAC:27461905
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG009549 0.5kb upstream 0.5kb upstream 46245 true scaffold_2: 25262711-25308955 Theobroma cacao
Thecc1EG009549 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 25262711-25263210 Theobroma cacao
Thecc1EG009549 0.5kb downstream 0.5kb downstream 46245 true scaffold_2: 25263211-25309455 Theobroma cacao
Thecc1EG009549 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 25308956-25309455 Theobroma cacao
Thecc1EG009549 1.0kb upstream 1.0kb upstream 46745 true scaffold_2: 25262211-25308955 Theobroma cacao
Thecc1EG009549 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 25262211-25263210 Theobroma cacao
Thecc1EG009549 1.0kb downstream 1.0kb downstream 46745 true scaffold_2: 25263211-25309955 Theobroma cacao
Thecc1EG009549 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 25308956-25309955 Theobroma cacao
Thecc1EG009549 2.0kb upstream 2.0kb upstream 47745 true scaffold_2: 25261211-25308955 Theobroma cacao
Thecc1EG009549 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 25261211-25263210 Theobroma cacao
Thecc1EG009549 2.0kb downstream 2.0kb downstream 47745 true scaffold_2: 25263211-25310955 Theobroma cacao
Thecc1EG009549 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 25308956-25310955 Theobroma cacao
Thecc1EG009549 5.0kb upstream 5.0kb upstream 50745 true scaffold_2: 25258211-25308955 Theobroma cacao
Thecc1EG009549 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 25258211-25263210 Theobroma cacao
Thecc1EG009549 5.0kb downstream 5.0kb downstream 50745 true scaffold_2: 25263211-25313955 Theobroma cacao
Thecc1EG009549 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 25308956-25313955 Theobroma cacao
Thecc1EG009549 10.0kb upstream 10.0kb upstream 55745 true scaffold_2: 25253211-25308955 Theobroma cacao
Thecc1EG009549 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 25253211-25263210 Theobroma cacao
Thecc1EG009549 10.0kb downstream 10.0kb downstream 55745 true scaffold_2: 25263211-25318955 Theobroma cacao
Thecc1EG009549 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 25308956-25318955 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain