Gene : Thecc1EG009557 T. cacao v1.1
Defline:  (1 of 16) PF00098//PF03732 - Zinc knuckle (zf-CCHC) // Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  2219
Name:  ? Thecc1EG009557 Secondary Identifier:  ? PAC:27465012
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG009557 0.5kb upstream 0.5kb upstream 2770 true scaffold_2: 25352761-25355530 Theobroma cacao
Thecc1EG009557 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 25355031-25355530 Theobroma cacao
Thecc1EG009557 0.5kb downstream 0.5kb downstream 2770 true scaffold_2: 25352261-25355030 Theobroma cacao
Thecc1EG009557 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 25352261-25352760 Theobroma cacao
Thecc1EG009557 1.0kb upstream 1.0kb upstream 3270 true scaffold_2: 25352761-25356030 Theobroma cacao
Thecc1EG009557 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 25355031-25356030 Theobroma cacao
Thecc1EG009557 1.0kb downstream 1.0kb downstream 3270 true scaffold_2: 25351761-25355030 Theobroma cacao
Thecc1EG009557 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 25351761-25352760 Theobroma cacao
Thecc1EG009557 2.0kb upstream 2.0kb upstream 4270 true scaffold_2: 25352761-25357030 Theobroma cacao
Thecc1EG009557 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 25355031-25357030 Theobroma cacao
Thecc1EG009557 2.0kb downstream 2.0kb downstream 4270 true scaffold_2: 25350761-25355030 Theobroma cacao
Thecc1EG009557 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 25350761-25352760 Theobroma cacao
Thecc1EG009557 5.0kb upstream 5.0kb upstream 7270 true scaffold_2: 25352761-25360030 Theobroma cacao
Thecc1EG009557 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 25355031-25360030 Theobroma cacao
Thecc1EG009557 5.0kb downstream 5.0kb downstream 7270 true scaffold_2: 25347761-25355030 Theobroma cacao
Thecc1EG009557 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 25347761-25352760 Theobroma cacao
Thecc1EG009557 10.0kb upstream 10.0kb upstream 12270 true scaffold_2: 25352761-25365030 Theobroma cacao
Thecc1EG009557 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 25355031-25365030 Theobroma cacao
Thecc1EG009557 10.0kb downstream 10.0kb downstream 12270 true scaffold_2: 25342761-25355030 Theobroma cacao
Thecc1EG009557 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 25342761-25352760 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain