Gene : Thecc1EG008910 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  2088
Name:  ? Thecc1EG008910 Secondary Identifier:  ? PAC:27464905
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG008910 0.5kb upstream 0.5kb upstream 1704 true scaffold_2: 18139151-18140854 Theobroma cacao
Thecc1EG008910 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 18139151-18139650 Theobroma cacao
Thecc1EG008910 0.5kb downstream 0.5kb downstream 1704 true scaffold_2: 18139651-18141354 Theobroma cacao
Thecc1EG008910 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 18140855-18141354 Theobroma cacao
Thecc1EG008910 1.0kb upstream 1.0kb upstream 2204 true scaffold_2: 18138651-18140854 Theobroma cacao
Thecc1EG008910 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 18138651-18139650 Theobroma cacao
Thecc1EG008910 1.0kb downstream 1.0kb downstream 2204 true scaffold_2: 18139651-18141854 Theobroma cacao
Thecc1EG008910 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 18140855-18141854 Theobroma cacao
Thecc1EG008910 2.0kb upstream 2.0kb upstream 3204 true scaffold_2: 18137651-18140854 Theobroma cacao
Thecc1EG008910 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 18137651-18139650 Theobroma cacao
Thecc1EG008910 2.0kb downstream 2.0kb downstream 3204 true scaffold_2: 18139651-18142854 Theobroma cacao
Thecc1EG008910 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 18140855-18142854 Theobroma cacao
Thecc1EG008910 5.0kb upstream 5.0kb upstream 6204 true scaffold_2: 18134651-18140854 Theobroma cacao
Thecc1EG008910 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 18134651-18139650 Theobroma cacao
Thecc1EG008910 5.0kb downstream 5.0kb downstream 6204 true scaffold_2: 18139651-18145854 Theobroma cacao
Thecc1EG008910 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 18140855-18145854 Theobroma cacao
Thecc1EG008910 10.0kb upstream 10.0kb upstream 11204 true scaffold_2: 18129651-18140854 Theobroma cacao
Thecc1EG008910 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 18129651-18139650 Theobroma cacao
Thecc1EG008910 10.0kb downstream 10.0kb downstream 11204 true scaffold_2: 18139651-18150854 Theobroma cacao
Thecc1EG008910 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 18140855-18150854 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823880 5264 Brassicales-Malvales View MSA
124319934 5266 SBM View MSA
124168432 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain