Gene : Thecc1EG009825 T. cacao v1.1
Defline:  (1 of 2) PTHR10178//PTHR10178:SF275 - GAG/POL/ENV POLYPROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2285
Name:  ? Thecc1EG009825 Secondary Identifier:  ? PAC:27463335
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG009825 0.5kb upstream 0.5kb upstream 3151 true scaffold_2: 27852368-27855518 Theobroma cacao
Thecc1EG009825 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 27855019-27855518 Theobroma cacao
Thecc1EG009825 0.5kb downstream 0.5kb downstream 3151 true scaffold_2: 27851868-27855018 Theobroma cacao
Thecc1EG009825 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 27851868-27852367 Theobroma cacao
Thecc1EG009825 1.0kb upstream 1.0kb upstream 3651 true scaffold_2: 27852368-27856018 Theobroma cacao
Thecc1EG009825 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 27855019-27856018 Theobroma cacao
Thecc1EG009825 1.0kb downstream 1.0kb downstream 3651 true scaffold_2: 27851368-27855018 Theobroma cacao
Thecc1EG009825 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 27851368-27852367 Theobroma cacao
Thecc1EG009825 2.0kb upstream 2.0kb upstream 4651 true scaffold_2: 27852368-27857018 Theobroma cacao
Thecc1EG009825 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 27855019-27857018 Theobroma cacao
Thecc1EG009825 2.0kb downstream 2.0kb downstream 4651 true scaffold_2: 27850368-27855018 Theobroma cacao
Thecc1EG009825 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 27850368-27852367 Theobroma cacao
Thecc1EG009825 5.0kb upstream 5.0kb upstream 7651 true scaffold_2: 27852368-27860018 Theobroma cacao
Thecc1EG009825 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 27855019-27860018 Theobroma cacao
Thecc1EG009825 5.0kb downstream 5.0kb downstream 7651 true scaffold_2: 27847368-27855018 Theobroma cacao
Thecc1EG009825 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 27847368-27852367 Theobroma cacao
Thecc1EG009825 10.0kb upstream 10.0kb upstream 12651 true scaffold_2: 27852368-27865018 Theobroma cacao
Thecc1EG009825 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 27855019-27865018 Theobroma cacao
Thecc1EG009825 10.0kb downstream 10.0kb downstream 12651 true scaffold_2: 27842368-27855018 Theobroma cacao
Thecc1EG009825 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 27842368-27852367 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain