Gene : Thecc1EG009759 T. cacao v1.1
Defline:  Gag protease polyprotein Genomic Order:  2273
Name:  ? Thecc1EG009759 Secondary Identifier:  ? PAC:27462621
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG009759 0.5kb upstream 0.5kb upstream 5858 true scaffold_2: 27251155-27257012 Theobroma cacao
Thecc1EG009759 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 27256513-27257012 Theobroma cacao
Thecc1EG009759 0.5kb downstream 0.5kb downstream 5858 true scaffold_2: 27250655-27256512 Theobroma cacao
Thecc1EG009759 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 27250655-27251154 Theobroma cacao
Thecc1EG009759 1.0kb upstream 1.0kb upstream 6358 true scaffold_2: 27251155-27257512 Theobroma cacao
Thecc1EG009759 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 27256513-27257512 Theobroma cacao
Thecc1EG009759 1.0kb downstream 1.0kb downstream 6358 true scaffold_2: 27250155-27256512 Theobroma cacao
Thecc1EG009759 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 27250155-27251154 Theobroma cacao
Thecc1EG009759 2.0kb upstream 2.0kb upstream 7358 true scaffold_2: 27251155-27258512 Theobroma cacao
Thecc1EG009759 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 27256513-27258512 Theobroma cacao
Thecc1EG009759 2.0kb downstream 2.0kb downstream 7358 true scaffold_2: 27249155-27256512 Theobroma cacao
Thecc1EG009759 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 27249155-27251154 Theobroma cacao
Thecc1EG009759 5.0kb upstream 5.0kb upstream 10358 true scaffold_2: 27251155-27261512 Theobroma cacao
Thecc1EG009759 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 27256513-27261512 Theobroma cacao
Thecc1EG009759 5.0kb downstream 5.0kb downstream 10358 true scaffold_2: 27246155-27256512 Theobroma cacao
Thecc1EG009759 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 27246155-27251154 Theobroma cacao
Thecc1EG009759 10.0kb upstream 10.0kb upstream 15358 true scaffold_2: 27251155-27266512 Theobroma cacao
Thecc1EG009759 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 27256513-27266512 Theobroma cacao
Thecc1EG009759 10.0kb downstream 10.0kb downstream 15358 true scaffold_2: 27241155-27256512 Theobroma cacao
Thecc1EG009759 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 27241155-27251154 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain