Gene : Thecc1EG010428 T. cacao v1.1
Defline:  (1 of 47) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  2549
Name:  ? Thecc1EG010428 Secondary Identifier:  ? PAC:27464687
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG010428 0.5kb upstream 0.5kb upstream 4985 true scaffold_2: 33334303-33339287 Theobroma cacao
Thecc1EG010428 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 33338788-33339287 Theobroma cacao
Thecc1EG010428 0.5kb downstream 0.5kb downstream 4985 true scaffold_2: 33333803-33338787 Theobroma cacao
Thecc1EG010428 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 33333803-33334302 Theobroma cacao
Thecc1EG010428 1.0kb upstream 1.0kb upstream 5485 true scaffold_2: 33334303-33339787 Theobroma cacao
Thecc1EG010428 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 33338788-33339787 Theobroma cacao
Thecc1EG010428 1.0kb downstream 1.0kb downstream 5485 true scaffold_2: 33333303-33338787 Theobroma cacao
Thecc1EG010428 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 33333303-33334302 Theobroma cacao
Thecc1EG010428 2.0kb upstream 2.0kb upstream 6485 true scaffold_2: 33334303-33340787 Theobroma cacao
Thecc1EG010428 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 33338788-33340787 Theobroma cacao
Thecc1EG010428 2.0kb downstream 2.0kb downstream 6485 true scaffold_2: 33332303-33338787 Theobroma cacao
Thecc1EG010428 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 33332303-33334302 Theobroma cacao
Thecc1EG010428 5.0kb upstream 5.0kb upstream 9485 true scaffold_2: 33334303-33343787 Theobroma cacao
Thecc1EG010428 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 33338788-33343787 Theobroma cacao
Thecc1EG010428 5.0kb downstream 5.0kb downstream 9485 true scaffold_2: 33329303-33338787 Theobroma cacao
Thecc1EG010428 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 33329303-33334302 Theobroma cacao
Thecc1EG010428 10.0kb upstream 10.0kb upstream 14485 true scaffold_2: 33334303-33348787 Theobroma cacao
Thecc1EG010428 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 33338788-33348787 Theobroma cacao
Thecc1EG010428 10.0kb downstream 10.0kb downstream 14485 true scaffold_2: 33324303-33338787 Theobroma cacao
Thecc1EG010428 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 33324303-33334302 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841248 5264 Brassicales-Malvales View MSA
124350615 5266 SBM View MSA
124253184 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain