Gene : Thecc1EG013367 T. cacao v1.1
Defline:  (1 of 57) PF08284 - Retroviral aspartyl protease (RVP_2) Genomic Order:  697
Name:  ? Thecc1EG013367 Secondary Identifier:  ? PAC:27446762
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG013367 0.5kb upstream 0.5kb upstream 2988 true scaffold_3: 12277147-12280134 Theobroma cacao
Thecc1EG013367 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12277147-12277646 Theobroma cacao
Thecc1EG013367 0.5kb downstream 0.5kb downstream 2988 true scaffold_3: 12277647-12280634 Theobroma cacao
Thecc1EG013367 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12280135-12280634 Theobroma cacao
Thecc1EG013367 1.0kb upstream 1.0kb upstream 3488 true scaffold_3: 12276647-12280134 Theobroma cacao
Thecc1EG013367 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12276647-12277646 Theobroma cacao
Thecc1EG013367 1.0kb downstream 1.0kb downstream 3488 true scaffold_3: 12277647-12281134 Theobroma cacao
Thecc1EG013367 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12280135-12281134 Theobroma cacao
Thecc1EG013367 2.0kb upstream 2.0kb upstream 4488 true scaffold_3: 12275647-12280134 Theobroma cacao
Thecc1EG013367 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12275647-12277646 Theobroma cacao
Thecc1EG013367 2.0kb downstream 2.0kb downstream 4488 true scaffold_3: 12277647-12282134 Theobroma cacao
Thecc1EG013367 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12280135-12282134 Theobroma cacao
Thecc1EG013367 5.0kb upstream 5.0kb upstream 7488 true scaffold_3: 12272647-12280134 Theobroma cacao
Thecc1EG013367 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12272647-12277646 Theobroma cacao
Thecc1EG013367 5.0kb downstream 5.0kb downstream 7488 true scaffold_3: 12277647-12285134 Theobroma cacao
Thecc1EG013367 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12280135-12285134 Theobroma cacao
Thecc1EG013367 10.0kb upstream 10.0kb upstream 12488 true scaffold_3: 12267647-12280134 Theobroma cacao
Thecc1EG013367 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12267647-12277646 Theobroma cacao
Thecc1EG013367 10.0kb downstream 10.0kb downstream 12488 true scaffold_3: 12277647-12290134 Theobroma cacao
Thecc1EG013367 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12280135-12290134 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823880 5264 Brassicales-Malvales View MSA
124319934 5266 SBM View MSA
124168432 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain