Gene : Thecc1EG013381 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  701
Name:  ? Thecc1EG013381 Secondary Identifier:  ? PAC:27450137
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG013381 0.5kb upstream 0.5kb upstream 12041 true scaffold_3: 12388984-12401024 Theobroma cacao
Thecc1EG013381 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 12400525-12401024 Theobroma cacao
Thecc1EG013381 0.5kb downstream 0.5kb downstream 12041 true scaffold_3: 12388484-12400524 Theobroma cacao
Thecc1EG013381 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 12388484-12388983 Theobroma cacao
Thecc1EG013381 1.0kb upstream 1.0kb upstream 12541 true scaffold_3: 12388984-12401524 Theobroma cacao
Thecc1EG013381 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 12400525-12401524 Theobroma cacao
Thecc1EG013381 1.0kb downstream 1.0kb downstream 12541 true scaffold_3: 12387984-12400524 Theobroma cacao
Thecc1EG013381 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 12387984-12388983 Theobroma cacao
Thecc1EG013381 2.0kb upstream 2.0kb upstream 13541 true scaffold_3: 12388984-12402524 Theobroma cacao
Thecc1EG013381 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 12400525-12402524 Theobroma cacao
Thecc1EG013381 2.0kb downstream 2.0kb downstream 13541 true scaffold_3: 12386984-12400524 Theobroma cacao
Thecc1EG013381 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 12386984-12388983 Theobroma cacao
Thecc1EG013381 5.0kb upstream 5.0kb upstream 16541 true scaffold_3: 12388984-12405524 Theobroma cacao
Thecc1EG013381 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 12400525-12405524 Theobroma cacao
Thecc1EG013381 5.0kb downstream 5.0kb downstream 16541 true scaffold_3: 12383984-12400524 Theobroma cacao
Thecc1EG013381 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 12383984-12388983 Theobroma cacao
Thecc1EG013381 10.0kb upstream 10.0kb upstream 21541 true scaffold_3: 12388984-12410524 Theobroma cacao
Thecc1EG013381 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 12400525-12410524 Theobroma cacao
Thecc1EG013381 10.0kb downstream 10.0kb downstream 21541 true scaffold_3: 12378984-12400524 Theobroma cacao
Thecc1EG013381 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 12378984-12388983 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823880 5264 Brassicales-Malvales View MSA
124319934 5266 SBM View MSA
124168432 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain