Gene : Thecc1EG013057 T. cacao v1.1
Defline:  (1 of 2) PF00098//PF00665//PF03732 - Zinc knuckle (zf-CCHC) // Integrase core domain (rve) // Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  644
Name:  ? Thecc1EG013057 Secondary Identifier:  ? PAC:27450660
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG013057 0.5kb upstream 0.5kb upstream 13645 true scaffold_3: 8831585-8845229 Theobroma cacao
Thecc1EG013057 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 8831585-8832084 Theobroma cacao
Thecc1EG013057 0.5kb downstream 0.5kb downstream 13645 true scaffold_3: 8832085-8845729 Theobroma cacao
Thecc1EG013057 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 8845230-8845729 Theobroma cacao
Thecc1EG013057 1.0kb upstream 1.0kb upstream 14145 true scaffold_3: 8831085-8845229 Theobroma cacao
Thecc1EG013057 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 8831085-8832084 Theobroma cacao
Thecc1EG013057 1.0kb downstream 1.0kb downstream 14145 true scaffold_3: 8832085-8846229 Theobroma cacao
Thecc1EG013057 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 8845230-8846229 Theobroma cacao
Thecc1EG013057 2.0kb upstream 2.0kb upstream 15145 true scaffold_3: 8830085-8845229 Theobroma cacao
Thecc1EG013057 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 8830085-8832084 Theobroma cacao
Thecc1EG013057 2.0kb downstream 2.0kb downstream 15145 true scaffold_3: 8832085-8847229 Theobroma cacao
Thecc1EG013057 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 8845230-8847229 Theobroma cacao
Thecc1EG013057 5.0kb upstream 5.0kb upstream 18145 true scaffold_3: 8827085-8845229 Theobroma cacao
Thecc1EG013057 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 8827085-8832084 Theobroma cacao
Thecc1EG013057 5.0kb downstream 5.0kb downstream 18145 true scaffold_3: 8832085-8850229 Theobroma cacao
Thecc1EG013057 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 8845230-8850229 Theobroma cacao
Thecc1EG013057 10.0kb upstream 10.0kb upstream 23145 true scaffold_3: 8822085-8845229 Theobroma cacao
Thecc1EG013057 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 8822085-8832084 Theobroma cacao
Thecc1EG013057 10.0kb downstream 10.0kb downstream 23145 true scaffold_3: 8832085-8855229 Theobroma cacao
Thecc1EG013057 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 8845230-8855229 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823791 5264 Brassicales-Malvales View MSA
124319847 5266 SBM View MSA
124255311 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain