Gene : Thecc1EG012960 T. cacao v1.1
Defline:  (1 of 16) PF00098//PF03732 - Zinc knuckle (zf-CCHC) // Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  618
Name:  ? Thecc1EG012960 Secondary Identifier:  ? PAC:27451173
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG012960 0.5kb upstream 0.5kb upstream 1946 true scaffold_3: 7878266-7880211 Theobroma cacao
Thecc1EG012960 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7879712-7880211 Theobroma cacao
Thecc1EG012960 0.5kb downstream 0.5kb downstream 1946 true scaffold_3: 7877766-7879711 Theobroma cacao
Thecc1EG012960 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7877766-7878265 Theobroma cacao
Thecc1EG012960 1.0kb upstream 1.0kb upstream 2446 true scaffold_3: 7878266-7880711 Theobroma cacao
Thecc1EG012960 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7879712-7880711 Theobroma cacao
Thecc1EG012960 1.0kb downstream 1.0kb downstream 2446 true scaffold_3: 7877266-7879711 Theobroma cacao
Thecc1EG012960 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7877266-7878265 Theobroma cacao
Thecc1EG012960 2.0kb upstream 2.0kb upstream 3446 true scaffold_3: 7878266-7881711 Theobroma cacao
Thecc1EG012960 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7879712-7881711 Theobroma cacao
Thecc1EG012960 2.0kb downstream 2.0kb downstream 3446 true scaffold_3: 7876266-7879711 Theobroma cacao
Thecc1EG012960 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 7876266-7878265 Theobroma cacao
Thecc1EG012960 5.0kb upstream 5.0kb upstream 6446 true scaffold_3: 7878266-7884711 Theobroma cacao
Thecc1EG012960 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7879712-7884711 Theobroma cacao
Thecc1EG012960 5.0kb downstream 5.0kb downstream 6446 true scaffold_3: 7873266-7879711 Theobroma cacao
Thecc1EG012960 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 7873266-7878265 Theobroma cacao
Thecc1EG012960 10.0kb upstream 10.0kb upstream 11446 true scaffold_3: 7878266-7889711 Theobroma cacao
Thecc1EG012960 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7879712-7889711 Theobroma cacao
Thecc1EG012960 10.0kb downstream 10.0kb downstream 11446 true scaffold_3: 7868266-7879711 Theobroma cacao
Thecc1EG012960 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 7868266-7878265 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain