Gene : Thecc1EG017410 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  513
Name:  ? Thecc1EG017410 Secondary Identifier:  ? PAC:27455130
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG017410 0.5kb upstream 0.5kb upstream 7766 true scaffold_4: 3539525-3547290 Theobroma cacao
Thecc1EG017410 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 3539525-3540024 Theobroma cacao
Thecc1EG017410 0.5kb downstream 0.5kb downstream 7766 true scaffold_4: 3540025-3547790 Theobroma cacao
Thecc1EG017410 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 3547291-3547790 Theobroma cacao
Thecc1EG017410 1.0kb upstream 1.0kb upstream 8266 true scaffold_4: 3539025-3547290 Theobroma cacao
Thecc1EG017410 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 3539025-3540024 Theobroma cacao
Thecc1EG017410 1.0kb downstream 1.0kb downstream 8266 true scaffold_4: 3540025-3548290 Theobroma cacao
Thecc1EG017410 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 3547291-3548290 Theobroma cacao
Thecc1EG017410 2.0kb upstream 2.0kb upstream 9266 true scaffold_4: 3538025-3547290 Theobroma cacao
Thecc1EG017410 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 3538025-3540024 Theobroma cacao
Thecc1EG017410 2.0kb downstream 2.0kb downstream 9266 true scaffold_4: 3540025-3549290 Theobroma cacao
Thecc1EG017410 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 3547291-3549290 Theobroma cacao
Thecc1EG017410 5.0kb upstream 5.0kb upstream 12266 true scaffold_4: 3535025-3547290 Theobroma cacao
Thecc1EG017410 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 3535025-3540024 Theobroma cacao
Thecc1EG017410 5.0kb downstream 5.0kb downstream 12266 true scaffold_4: 3540025-3552290 Theobroma cacao
Thecc1EG017410 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 3547291-3552290 Theobroma cacao
Thecc1EG017410 10.0kb upstream 10.0kb upstream 17266 true scaffold_4: 3530025-3547290 Theobroma cacao
Thecc1EG017410 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 3530025-3540024 Theobroma cacao
Thecc1EG017410 10.0kb downstream 10.0kb downstream 17266 true scaffold_4: 3540025-3557290 Theobroma cacao
Thecc1EG017410 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 3547291-3557290 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823880 5264 Brassicales-Malvales View MSA
124319934 5266 SBM View MSA
124168432 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain