Gene : Thecc1EG018622 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  899
Name:  ? Thecc1EG018622 Secondary Identifier:  ? PAC:27455950
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG018622 0.5kb upstream 0.5kb upstream 4424 true scaffold_4: 16731352-16735775 Theobroma cacao
Thecc1EG018622 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 16731352-16731851 Theobroma cacao
Thecc1EG018622 0.5kb downstream 0.5kb downstream 4424 true scaffold_4: 16731852-16736275 Theobroma cacao
Thecc1EG018622 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 16735776-16736275 Theobroma cacao
Thecc1EG018622 1.0kb upstream 1.0kb upstream 4924 true scaffold_4: 16730852-16735775 Theobroma cacao
Thecc1EG018622 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 16730852-16731851 Theobroma cacao
Thecc1EG018622 1.0kb downstream 1.0kb downstream 4924 true scaffold_4: 16731852-16736775 Theobroma cacao
Thecc1EG018622 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 16735776-16736775 Theobroma cacao
Thecc1EG018622 2.0kb upstream 2.0kb upstream 5924 true scaffold_4: 16729852-16735775 Theobroma cacao
Thecc1EG018622 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 16729852-16731851 Theobroma cacao
Thecc1EG018622 2.0kb downstream 2.0kb downstream 5924 true scaffold_4: 16731852-16737775 Theobroma cacao
Thecc1EG018622 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 16735776-16737775 Theobroma cacao
Thecc1EG018622 5.0kb upstream 5.0kb upstream 8924 true scaffold_4: 16726852-16735775 Theobroma cacao
Thecc1EG018622 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 16726852-16731851 Theobroma cacao
Thecc1EG018622 5.0kb downstream 5.0kb downstream 8924 true scaffold_4: 16731852-16740775 Theobroma cacao
Thecc1EG018622 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 16735776-16740775 Theobroma cacao
Thecc1EG018622 10.0kb upstream 10.0kb upstream 13924 true scaffold_4: 16721852-16735775 Theobroma cacao
Thecc1EG018622 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 16721852-16731851 Theobroma cacao
Thecc1EG018622 10.0kb downstream 10.0kb downstream 13924 true scaffold_4: 16731852-16745775 Theobroma cacao
Thecc1EG018622 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 16735776-16745775 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain