Gene : Thecc1EG019740 T. cacao v1.1
Defline:  (1 of 47) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  1602
Name:  ? Thecc1EG019740 Secondary Identifier:  ? PAC:27454332
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG019740 0.5kb upstream 0.5kb upstream 1973 true scaffold_4: 24674640-24676612 Theobroma cacao
Thecc1EG019740 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 24674640-24675139 Theobroma cacao
Thecc1EG019740 0.5kb downstream 0.5kb downstream 1973 true scaffold_4: 24675140-24677112 Theobroma cacao
Thecc1EG019740 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 24676613-24677112 Theobroma cacao
Thecc1EG019740 1.0kb upstream 1.0kb upstream 2473 true scaffold_4: 24674140-24676612 Theobroma cacao
Thecc1EG019740 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 24674140-24675139 Theobroma cacao
Thecc1EG019740 1.0kb downstream 1.0kb downstream 2473 true scaffold_4: 24675140-24677612 Theobroma cacao
Thecc1EG019740 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 24676613-24677612 Theobroma cacao
Thecc1EG019740 2.0kb upstream 2.0kb upstream 3473 true scaffold_4: 24673140-24676612 Theobroma cacao
Thecc1EG019740 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 24673140-24675139 Theobroma cacao
Thecc1EG019740 2.0kb downstream 2.0kb downstream 3473 true scaffold_4: 24675140-24678612 Theobroma cacao
Thecc1EG019740 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 24676613-24678612 Theobroma cacao
Thecc1EG019740 5.0kb upstream 5.0kb upstream 6473 true scaffold_4: 24670140-24676612 Theobroma cacao
Thecc1EG019740 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 24670140-24675139 Theobroma cacao
Thecc1EG019740 5.0kb downstream 5.0kb downstream 6473 true scaffold_4: 24675140-24681612 Theobroma cacao
Thecc1EG019740 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 24676613-24681612 Theobroma cacao
Thecc1EG019740 10.0kb upstream 10.0kb upstream 11473 true scaffold_4: 24665140-24676612 Theobroma cacao
Thecc1EG019740 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 24665140-24675139 Theobroma cacao
Thecc1EG019740 10.0kb downstream 10.0kb downstream 11473 true scaffold_4: 24675140-24686612 Theobroma cacao
Thecc1EG019740 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 24676613-24686612 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841248 5264 Brassicales-Malvales View MSA
124350615 5266 SBM View MSA
124253184 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain