Gene : Thecc1EG023639 T. cacao v1.1
Defline:  (1 of 22) PF00098//PF03732 - Zinc knuckle (zf-CCHC) // Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  1161
Name:  ? Thecc1EG023639 Secondary Identifier:  ? PAC:27422645
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG023639 0.5kb upstream 0.5kb upstream 4767 true scaffold_5: 16882835-16887601 Theobroma cacao
Thecc1EG023639 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 16882835-16883334 Theobroma cacao
Thecc1EG023639 0.5kb downstream 0.5kb downstream 4767 true scaffold_5: 16883335-16888101 Theobroma cacao
Thecc1EG023639 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 16887602-16888101 Theobroma cacao
Thecc1EG023639 1.0kb upstream 1.0kb upstream 5267 true scaffold_5: 16882335-16887601 Theobroma cacao
Thecc1EG023639 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 16882335-16883334 Theobroma cacao
Thecc1EG023639 1.0kb downstream 1.0kb downstream 5267 true scaffold_5: 16883335-16888601 Theobroma cacao
Thecc1EG023639 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 16887602-16888601 Theobroma cacao
Thecc1EG023639 2.0kb upstream 2.0kb upstream 6267 true scaffold_5: 16881335-16887601 Theobroma cacao
Thecc1EG023639 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 16881335-16883334 Theobroma cacao
Thecc1EG023639 2.0kb downstream 2.0kb downstream 6267 true scaffold_5: 16883335-16889601 Theobroma cacao
Thecc1EG023639 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 16887602-16889601 Theobroma cacao
Thecc1EG023639 5.0kb upstream 5.0kb upstream 9267 true scaffold_5: 16878335-16887601 Theobroma cacao
Thecc1EG023639 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 16878335-16883334 Theobroma cacao
Thecc1EG023639 5.0kb downstream 5.0kb downstream 9267 true scaffold_5: 16883335-16892601 Theobroma cacao
Thecc1EG023639 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 16887602-16892601 Theobroma cacao
Thecc1EG023639 10.0kb upstream 10.0kb upstream 14267 true scaffold_5: 16873335-16887601 Theobroma cacao
Thecc1EG023639 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 16873335-16883334 Theobroma cacao
Thecc1EG023639 10.0kb downstream 10.0kb downstream 14267 true scaffold_5: 16883335-16897601 Theobroma cacao
Thecc1EG023639 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 16887602-16897601 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823880 5264 Brassicales-Malvales View MSA
124319934 5266 SBM View MSA
124168432 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain