Gene : Thecc1EG023328 T. cacao v1.1
Defline:  (1 of 15) PTHR10178//PTHR10178:SF309 - GAG/POL/ENV POLYPROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1108
Name:  ? Thecc1EG023328 Secondary Identifier:  ? PAC:27422720
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG023328 0.5kb upstream 0.5kb upstream 4675 true scaffold_5: 13044289-13048963 Theobroma cacao
Thecc1EG023328 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 13048464-13048963 Theobroma cacao
Thecc1EG023328 0.5kb downstream 0.5kb downstream 4675 true scaffold_5: 13043789-13048463 Theobroma cacao
Thecc1EG023328 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 13043789-13044288 Theobroma cacao
Thecc1EG023328 1.0kb upstream 1.0kb upstream 5175 true scaffold_5: 13044289-13049463 Theobroma cacao
Thecc1EG023328 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 13048464-13049463 Theobroma cacao
Thecc1EG023328 1.0kb downstream 1.0kb downstream 5175 true scaffold_5: 13043289-13048463 Theobroma cacao
Thecc1EG023328 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 13043289-13044288 Theobroma cacao
Thecc1EG023328 2.0kb upstream 2.0kb upstream 6175 true scaffold_5: 13044289-13050463 Theobroma cacao
Thecc1EG023328 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 13048464-13050463 Theobroma cacao
Thecc1EG023328 2.0kb downstream 2.0kb downstream 6175 true scaffold_5: 13042289-13048463 Theobroma cacao
Thecc1EG023328 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 13042289-13044288 Theobroma cacao
Thecc1EG023328 5.0kb upstream 5.0kb upstream 9175 true scaffold_5: 13044289-13053463 Theobroma cacao
Thecc1EG023328 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 13048464-13053463 Theobroma cacao
Thecc1EG023328 5.0kb downstream 5.0kb downstream 9175 true scaffold_5: 13039289-13048463 Theobroma cacao
Thecc1EG023328 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 13039289-13044288 Theobroma cacao
Thecc1EG023328 10.0kb upstream 10.0kb upstream 14175 true scaffold_5: 13044289-13058463 Theobroma cacao
Thecc1EG023328 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 13048464-13058463 Theobroma cacao
Thecc1EG023328 10.0kb downstream 10.0kb downstream 14175 true scaffold_5: 13034289-13048463 Theobroma cacao
Thecc1EG023328 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 13034289-13044288 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823880 5264 Brassicales-Malvales View MSA
124319934 5266 SBM View MSA
124168432 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain