Gene : Thecc1EG023155 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  1093
Name:  ? Thecc1EG023155 Secondary Identifier:  ? PAC:27422775
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG023155 0.5kb upstream 0.5kb upstream 13560 true scaffold_5: 11112308-11125867 Theobroma cacao
Thecc1EG023155 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11125368-11125867 Theobroma cacao
Thecc1EG023155 0.5kb downstream 0.5kb downstream 13560 true scaffold_5: 11111808-11125367 Theobroma cacao
Thecc1EG023155 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11111808-11112307 Theobroma cacao
Thecc1EG023155 1.0kb upstream 1.0kb upstream 14060 true scaffold_5: 11112308-11126367 Theobroma cacao
Thecc1EG023155 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11125368-11126367 Theobroma cacao
Thecc1EG023155 1.0kb downstream 1.0kb downstream 14060 true scaffold_5: 11111308-11125367 Theobroma cacao
Thecc1EG023155 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11111308-11112307 Theobroma cacao
Thecc1EG023155 2.0kb upstream 2.0kb upstream 15060 true scaffold_5: 11112308-11127367 Theobroma cacao
Thecc1EG023155 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11125368-11127367 Theobroma cacao
Thecc1EG023155 2.0kb downstream 2.0kb downstream 15060 true scaffold_5: 11110308-11125367 Theobroma cacao
Thecc1EG023155 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11110308-11112307 Theobroma cacao
Thecc1EG023155 5.0kb upstream 5.0kb upstream 18060 true scaffold_5: 11112308-11130367 Theobroma cacao
Thecc1EG023155 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11125368-11130367 Theobroma cacao
Thecc1EG023155 5.0kb downstream 5.0kb downstream 18060 true scaffold_5: 11107308-11125367 Theobroma cacao
Thecc1EG023155 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11107308-11112307 Theobroma cacao
Thecc1EG023155 10.0kb upstream 10.0kb upstream 23060 true scaffold_5: 11112308-11135367 Theobroma cacao
Thecc1EG023155 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11125368-11135367 Theobroma cacao
Thecc1EG023155 10.0kb downstream 10.0kb downstream 23060 true scaffold_5: 11102308-11125367 Theobroma cacao
Thecc1EG023155 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11102308-11112307 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain