Gene : Thecc1EG023662 T. cacao v1.1
Defline:  (1 of 4) PF00385//PF00665 - Chromo (CHRromatin Organisation MOdifier) domain (Chromo) // Integrase core domain (rve) Genomic Order:  1166
Name:  ? Thecc1EG023662 Secondary Identifier:  ? PAC:27420900
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG023662 0.5kb upstream 0.5kb upstream 17185 true scaffold_5: 17176246-17193430 Theobroma cacao
Thecc1EG023662 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 17192931-17193430 Theobroma cacao
Thecc1EG023662 0.5kb downstream 0.5kb downstream 17185 true scaffold_5: 17175746-17192930 Theobroma cacao
Thecc1EG023662 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 17175746-17176245 Theobroma cacao
Thecc1EG023662 1.0kb upstream 1.0kb upstream 17685 true scaffold_5: 17176246-17193930 Theobroma cacao
Thecc1EG023662 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 17192931-17193930 Theobroma cacao
Thecc1EG023662 1.0kb downstream 1.0kb downstream 17685 true scaffold_5: 17175246-17192930 Theobroma cacao
Thecc1EG023662 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 17175246-17176245 Theobroma cacao
Thecc1EG023662 2.0kb upstream 2.0kb upstream 18685 true scaffold_5: 17176246-17194930 Theobroma cacao
Thecc1EG023662 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 17192931-17194930 Theobroma cacao
Thecc1EG023662 2.0kb downstream 2.0kb downstream 18685 true scaffold_5: 17174246-17192930 Theobroma cacao
Thecc1EG023662 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 17174246-17176245 Theobroma cacao
Thecc1EG023662 5.0kb upstream 5.0kb upstream 21685 true scaffold_5: 17176246-17197930 Theobroma cacao
Thecc1EG023662 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 17192931-17197930 Theobroma cacao
Thecc1EG023662 5.0kb downstream 5.0kb downstream 21685 true scaffold_5: 17171246-17192930 Theobroma cacao
Thecc1EG023662 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 17171246-17176245 Theobroma cacao
Thecc1EG023662 10.0kb upstream 10.0kb upstream 26685 true scaffold_5: 17176246-17202930 Theobroma cacao
Thecc1EG023662 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 17192931-17202930 Theobroma cacao
Thecc1EG023662 10.0kb downstream 10.0kb downstream 26685 true scaffold_5: 17166246-17192930 Theobroma cacao
Thecc1EG023662 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 17166246-17176245 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823791 5264 Brassicales-Malvales View MSA
124319847 5266 SBM View MSA
124255311 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain