Gene : Thecc1EG024518 T. cacao v1.1
Defline:  (1 of 2) PF00098//PF14223 - Zinc knuckle (zf-CCHC) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  1479
Name:  ? Thecc1EG024518 Secondary Identifier:  ? PAC:27420830
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG024518 0.5kb upstream 0.5kb upstream 3994 true scaffold_5: 26287681-26291674 Theobroma cacao
Thecc1EG024518 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 26291175-26291674 Theobroma cacao
Thecc1EG024518 0.5kb downstream 0.5kb downstream 3994 true scaffold_5: 26287181-26291174 Theobroma cacao
Thecc1EG024518 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 26287181-26287680 Theobroma cacao
Thecc1EG024518 1.0kb upstream 1.0kb upstream 4494 true scaffold_5: 26287681-26292174 Theobroma cacao
Thecc1EG024518 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 26291175-26292174 Theobroma cacao
Thecc1EG024518 1.0kb downstream 1.0kb downstream 4494 true scaffold_5: 26286681-26291174 Theobroma cacao
Thecc1EG024518 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 26286681-26287680 Theobroma cacao
Thecc1EG024518 2.0kb upstream 2.0kb upstream 5494 true scaffold_5: 26287681-26293174 Theobroma cacao
Thecc1EG024518 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 26291175-26293174 Theobroma cacao
Thecc1EG024518 2.0kb downstream 2.0kb downstream 5494 true scaffold_5: 26285681-26291174 Theobroma cacao
Thecc1EG024518 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 26285681-26287680 Theobroma cacao
Thecc1EG024518 5.0kb upstream 5.0kb upstream 8494 true scaffold_5: 26287681-26296174 Theobroma cacao
Thecc1EG024518 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 26291175-26296174 Theobroma cacao
Thecc1EG024518 5.0kb downstream 5.0kb downstream 8494 true scaffold_5: 26282681-26291174 Theobroma cacao
Thecc1EG024518 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 26282681-26287680 Theobroma cacao
Thecc1EG024518 10.0kb upstream 10.0kb upstream 13494 true scaffold_5: 26287681-26301174 Theobroma cacao
Thecc1EG024518 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 26291175-26301174 Theobroma cacao
Thecc1EG024518 10.0kb downstream 10.0kb downstream 13494 true scaffold_5: 26277681-26291174 Theobroma cacao
Thecc1EG024518 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 26277681-26287680 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123840065 5264 Brassicales-Malvales View MSA
124322674 5266 SBM View MSA
124251740 5268 Malvidae View MSA
124073483 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain