Gene : Thecc1EG028976 T. cacao v1.1
Defline:  (1 of 47) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  1058
Name:  ? Thecc1EG028976 Secondary Identifier:  ? PAC:27440468
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG028976 0.5kb upstream 0.5kb upstream 3959 true scaffold_6: 19782921-19786879 Theobroma cacao
Thecc1EG028976 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 19782921-19783420 Theobroma cacao
Thecc1EG028976 0.5kb downstream 0.5kb downstream 3959 true scaffold_6: 19783421-19787379 Theobroma cacao
Thecc1EG028976 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 19786880-19787379 Theobroma cacao
Thecc1EG028976 1.0kb upstream 1.0kb upstream 4459 true scaffold_6: 19782421-19786879 Theobroma cacao
Thecc1EG028976 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 19782421-19783420 Theobroma cacao
Thecc1EG028976 1.0kb downstream 1.0kb downstream 4459 true scaffold_6: 19783421-19787879 Theobroma cacao
Thecc1EG028976 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 19786880-19787879 Theobroma cacao
Thecc1EG028976 2.0kb upstream 2.0kb upstream 5459 true scaffold_6: 19781421-19786879 Theobroma cacao
Thecc1EG028976 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 19781421-19783420 Theobroma cacao
Thecc1EG028976 2.0kb downstream 2.0kb downstream 5459 true scaffold_6: 19783421-19788879 Theobroma cacao
Thecc1EG028976 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 19786880-19788879 Theobroma cacao
Thecc1EG028976 5.0kb upstream 5.0kb upstream 8459 true scaffold_6: 19778421-19786879 Theobroma cacao
Thecc1EG028976 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 19778421-19783420 Theobroma cacao
Thecc1EG028976 5.0kb downstream 5.0kb downstream 8459 true scaffold_6: 19783421-19791879 Theobroma cacao
Thecc1EG028976 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 19786880-19791879 Theobroma cacao
Thecc1EG028976 10.0kb upstream 10.0kb upstream 13459 true scaffold_6: 19773421-19786879 Theobroma cacao
Thecc1EG028976 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 19773421-19783420 Theobroma cacao
Thecc1EG028976 10.0kb downstream 10.0kb downstream 13459 true scaffold_6: 19783421-19796879 Theobroma cacao
Thecc1EG028976 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 19786880-19796879 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841248 5264 Brassicales-Malvales View MSA
124350615 5266 SBM View MSA
124253184 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain