Gene : Thecc1EG030041 T. cacao v1.1
Defline:  (1 of 58) PTHR11439//PTHR11439:SF192 - GAG-POL-RELATED RETROTRANSPOSON // SUBFAMILY NOT NAMED Genomic Order:  1989
Name:  ? Thecc1EG030041 Secondary Identifier:  ? PAC:27440221
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG030041 0.5kb upstream 0.5kb upstream 1591 true scaffold_6: 25527165-25528755 Theobroma cacao
Thecc1EG030041 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 25528256-25528755 Theobroma cacao
Thecc1EG030041 0.5kb downstream 0.5kb downstream 1591 true scaffold_6: 25526665-25528255 Theobroma cacao
Thecc1EG030041 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 25526665-25527164 Theobroma cacao
Thecc1EG030041 1.0kb upstream 1.0kb upstream 2091 true scaffold_6: 25527165-25529255 Theobroma cacao
Thecc1EG030041 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 25528256-25529255 Theobroma cacao
Thecc1EG030041 1.0kb downstream 1.0kb downstream 2091 true scaffold_6: 25526165-25528255 Theobroma cacao
Thecc1EG030041 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 25526165-25527164 Theobroma cacao
Thecc1EG030041 2.0kb upstream 2.0kb upstream 3091 true scaffold_6: 25527165-25530255 Theobroma cacao
Thecc1EG030041 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 25528256-25530255 Theobroma cacao
Thecc1EG030041 2.0kb downstream 2.0kb downstream 3091 true scaffold_6: 25525165-25528255 Theobroma cacao
Thecc1EG030041 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 25525165-25527164 Theobroma cacao
Thecc1EG030041 5.0kb upstream 5.0kb upstream 6091 true scaffold_6: 25527165-25533255 Theobroma cacao
Thecc1EG030041 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 25528256-25533255 Theobroma cacao
Thecc1EG030041 5.0kb downstream 5.0kb downstream 6091 true scaffold_6: 25522165-25528255 Theobroma cacao
Thecc1EG030041 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 25522165-25527164 Theobroma cacao
Thecc1EG030041 10.0kb upstream 10.0kb upstream 11091 true scaffold_6: 25527165-25538255 Theobroma cacao
Thecc1EG030041 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 25528256-25538255 Theobroma cacao
Thecc1EG030041 10.0kb downstream 10.0kb downstream 11091 true scaffold_6: 25517165-25528255 Theobroma cacao
Thecc1EG030041 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 25517165-25527164 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123841161 5264 Brassicales-Malvales View MSA
124351377 5266 SBM View MSA
124253923 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain