Gene : Thecc1EG033069 T. cacao v1.1
Defline:  (1 of 139) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  1641
Name:  ? Thecc1EG033069 Secondary Identifier:  ? PAC:27446492
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG033069 0.5kb upstream 0.5kb upstream 2505 true scaffold_7: 17619756-17622260 Theobroma cacao
Thecc1EG033069 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 17619756-17620255 Theobroma cacao
Thecc1EG033069 0.5kb downstream 0.5kb downstream 2505 true scaffold_7: 17620256-17622760 Theobroma cacao
Thecc1EG033069 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 17622261-17622760 Theobroma cacao
Thecc1EG033069 1.0kb upstream 1.0kb upstream 3005 true scaffold_7: 17619256-17622260 Theobroma cacao
Thecc1EG033069 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 17619256-17620255 Theobroma cacao
Thecc1EG033069 1.0kb downstream 1.0kb downstream 3005 true scaffold_7: 17620256-17623260 Theobroma cacao
Thecc1EG033069 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 17622261-17623260 Theobroma cacao
Thecc1EG033069 2.0kb upstream 2.0kb upstream 4005 true scaffold_7: 17618256-17622260 Theobroma cacao
Thecc1EG033069 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 17618256-17620255 Theobroma cacao
Thecc1EG033069 2.0kb downstream 2.0kb downstream 4005 true scaffold_7: 17620256-17624260 Theobroma cacao
Thecc1EG033069 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 17622261-17624260 Theobroma cacao
Thecc1EG033069 5.0kb upstream 5.0kb upstream 7005 true scaffold_7: 17615256-17622260 Theobroma cacao
Thecc1EG033069 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 17615256-17620255 Theobroma cacao
Thecc1EG033069 5.0kb downstream 5.0kb downstream 7005 true scaffold_7: 17620256-17627260 Theobroma cacao
Thecc1EG033069 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 17622261-17627260 Theobroma cacao
Thecc1EG033069 10.0kb upstream 10.0kb upstream 12005 true scaffold_7: 17610256-17622260 Theobroma cacao
Thecc1EG033069 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 17610256-17620255 Theobroma cacao
Thecc1EG033069 10.0kb downstream 10.0kb downstream 12005 true scaffold_7: 17620256-17632260 Theobroma cacao
Thecc1EG033069 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 17622261-17632260 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823880 5264 Brassicales-Malvales View MSA
124319934 5266 SBM View MSA
124168432 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain