Gene : Thecc1EG035772 T. cacao v1.1
Defline:  (1 of 4) PF00098//PF03732//PF08284 - Zinc knuckle (zf-CCHC) // Retrotransposon gag protein (Retrotrans_gag) // Retroviral aspartyl protease (RVP_2) Genomic Order:  1592
Name:  ? Thecc1EG035772 Secondary Identifier:  ? PAC:27459238
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG035772 0.5kb upstream 0.5kb upstream 60635 true scaffold_8: 12209821-12270455 Theobroma cacao
Thecc1EG035772 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 12269956-12270455 Theobroma cacao
Thecc1EG035772 0.5kb downstream 0.5kb downstream 60635 true scaffold_8: 12209321-12269955 Theobroma cacao
Thecc1EG035772 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 12209321-12209820 Theobroma cacao
Thecc1EG035772 1.0kb upstream 1.0kb upstream 61135 true scaffold_8: 12209821-12270955 Theobroma cacao
Thecc1EG035772 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 12269956-12270955 Theobroma cacao
Thecc1EG035772 1.0kb downstream 1.0kb downstream 61135 true scaffold_8: 12208821-12269955 Theobroma cacao
Thecc1EG035772 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 12208821-12209820 Theobroma cacao
Thecc1EG035772 2.0kb upstream 2.0kb upstream 62135 true scaffold_8: 12209821-12271955 Theobroma cacao
Thecc1EG035772 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 12269956-12271955 Theobroma cacao
Thecc1EG035772 2.0kb downstream 2.0kb downstream 62135 true scaffold_8: 12207821-12269955 Theobroma cacao
Thecc1EG035772 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 12207821-12209820 Theobroma cacao
Thecc1EG035772 5.0kb upstream 5.0kb upstream 65135 true scaffold_8: 12209821-12274955 Theobroma cacao
Thecc1EG035772 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 12269956-12274955 Theobroma cacao
Thecc1EG035772 5.0kb downstream 5.0kb downstream 65135 true scaffold_8: 12204821-12269955 Theobroma cacao
Thecc1EG035772 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 12204821-12209820 Theobroma cacao
Thecc1EG035772 10.0kb upstream 10.0kb upstream 70135 true scaffold_8: 12209821-12279955 Theobroma cacao
Thecc1EG035772 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 12269956-12279955 Theobroma cacao
Thecc1EG035772 10.0kb downstream 10.0kb downstream 70135 true scaffold_8: 12199821-12269955 Theobroma cacao
Thecc1EG035772 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 12199821-12209820 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain