Gene : Thecc1EG039915 T. cacao v1.1
Defline:  (1 of 16) PF00098//PF03732 - Zinc knuckle (zf-CCHC) // Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  2007
Name:  ? Thecc1EG039915 Secondary Identifier:  ? PAC:27430213
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Thecc1EG039915 0.5kb upstream 0.5kb upstream 16435 true scaffold_9: 24715052-24731486 Theobroma cacao
Thecc1EG039915 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 24715052-24715551 Theobroma cacao
Thecc1EG039915 0.5kb downstream 0.5kb downstream 16435 true scaffold_9: 24715552-24731986 Theobroma cacao
Thecc1EG039915 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 24731487-24731986 Theobroma cacao
Thecc1EG039915 1.0kb upstream 1.0kb upstream 16935 true scaffold_9: 24714552-24731486 Theobroma cacao
Thecc1EG039915 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 24714552-24715551 Theobroma cacao
Thecc1EG039915 1.0kb downstream 1.0kb downstream 16935 true scaffold_9: 24715552-24732486 Theobroma cacao
Thecc1EG039915 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 24731487-24732486 Theobroma cacao
Thecc1EG039915 2.0kb upstream 2.0kb upstream 17935 true scaffold_9: 24713552-24731486 Theobroma cacao
Thecc1EG039915 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 24713552-24715551 Theobroma cacao
Thecc1EG039915 2.0kb downstream 2.0kb downstream 17935 true scaffold_9: 24715552-24733486 Theobroma cacao
Thecc1EG039915 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 24731487-24733486 Theobroma cacao
Thecc1EG039915 5.0kb upstream 5.0kb upstream 20935 true scaffold_9: 24710552-24731486 Theobroma cacao
Thecc1EG039915 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 24710552-24715551 Theobroma cacao
Thecc1EG039915 5.0kb downstream 5.0kb downstream 20935 true scaffold_9: 24715552-24736486 Theobroma cacao
Thecc1EG039915 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 24731487-24736486 Theobroma cacao
Thecc1EG039915 10.0kb upstream 10.0kb upstream 25935 true scaffold_9: 24705552-24731486 Theobroma cacao
Thecc1EG039915 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 24705552-24715551 Theobroma cacao
Thecc1EG039915 10.0kb downstream 10.0kb downstream 25935 true scaffold_9: 24715552-24741486 Theobroma cacao
Thecc1EG039915 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 24731487-24741486 Theobroma cacao

9 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123823927 5264 Brassicales-Malvales View MSA
124319979 5266 SBM View MSA
124255310 5268 Malvidae View MSA
124074843 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain