Gene : Sobic.006G135000 S. bicolor v3.1.1
Defline:  (1 of 2) K11090 - lupus La protein (LA, SSB) Genomic Order:  1409
Name:  ? Sobic.006G135000 Secondary Identifier:  ? PAC:37946013
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.006G135000 0.5kb upstream 0.5kb upstream 6053 true Chr06: 49806402-49812454 Sorghum bicolor
Sobic.006G135000 0.5kb upstream 0.5kb upstream 500 false Chr06: 49811955-49812454 Sorghum bicolor
Sobic.006G135000 0.5kb downstream 0.5kb downstream 6053 true Chr06: 49805902-49811954 Sorghum bicolor
Sobic.006G135000 0.5kb downstream 0.5kb downstream 500 false Chr06: 49805902-49806401 Sorghum bicolor
Sobic.006G135000 1.0kb upstream 1.0kb upstream 6553 true Chr06: 49806402-49812954 Sorghum bicolor
Sobic.006G135000 1.0kb upstream 1.0kb upstream 1000 false Chr06: 49811955-49812954 Sorghum bicolor
Sobic.006G135000 1.0kb downstream 1.0kb downstream 6553 true Chr06: 49805402-49811954 Sorghum bicolor
Sobic.006G135000 1.0kb downstream 1.0kb downstream 1000 false Chr06: 49805402-49806401 Sorghum bicolor
Sobic.006G135000 2.0kb upstream 2.0kb upstream 7553 true Chr06: 49806402-49813954 Sorghum bicolor
Sobic.006G135000 2.0kb upstream 2.0kb upstream 2000 false Chr06: 49811955-49813954 Sorghum bicolor
Sobic.006G135000 2.0kb downstream 2.0kb downstream 7553 true Chr06: 49804402-49811954 Sorghum bicolor
Sobic.006G135000 2.0kb downstream 2.0kb downstream 2000 false Chr06: 49804402-49806401 Sorghum bicolor
Sobic.006G135000 5.0kb upstream 5.0kb upstream 10553 true Chr06: 49806402-49816954 Sorghum bicolor
Sobic.006G135000 5.0kb upstream 5.0kb upstream 5000 false Chr06: 49811955-49816954 Sorghum bicolor
Sobic.006G135000 5.0kb downstream 5.0kb downstream 10553 true Chr06: 49801402-49811954 Sorghum bicolor
Sobic.006G135000 5.0kb downstream 5.0kb downstream 5000 false Chr06: 49801402-49806401 Sorghum bicolor
Sobic.006G135000 10.0kb upstream 10.0kb upstream 15553 true Chr06: 49806402-49821954 Sorghum bicolor
Sobic.006G135000 10.0kb upstream 10.0kb upstream 10000 false Chr06: 49811955-49821954 Sorghum bicolor
Sobic.006G135000 10.0kb downstream 10.0kb downstream 15553 true Chr06: 49796402-49811954 Sorghum bicolor
Sobic.006G135000 10.0kb downstream 10.0kb downstream 10000 false Chr06: 49796402-49806401 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041135 5273 Angiosperm View MSA
122176578 5267 Panicoideae View MSA
124572104 5269 Grass View MSA
121349930 5274 Embryophyte View MSA
123427383 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.92     High  
cufflinks 0.168       Low
cufflinks 0.962       Low
cufflinks 2.791        
cufflinks 9.753        
cufflinks 1.677        
cufflinks 4.434        
cufflinks 0.363       Low
cufflinks 7.604        
cufflinks 7.534        
cufflinks 12.377     High  
cufflinks 11.017        
cufflinks 3.93        
cufflinks 11.499        
cufflinks 4.774        
cufflinks 0.716       Low
cufflinks 5.11        
cufflinks 5.712        
cufflinks 0.911       Low
cufflinks 4.251        
cufflinks 18.524     High High
cufflinks 16.337     High  
cufflinks 16.593     High  
cufflinks 17.549     High High
cufflinks 0.281       Low
cufflinks 0.108       Low
cufflinks 8.014        
cufflinks 1.234        
cufflinks 1.86        
cufflinks 9.569        

0 Strain