Gene : Lsat_1_v5_gn_6_26241 L. sativa V8
Defline:  (1 of 1) PF08302 - Fungal tRNA ligase phosphodiesterase domain (tRNA_lig_CPD) Genomic Order:  759
Name:  ? Lsat_1_v5_gn_6_26241 Secondary Identifier:  ? PAC:38938113
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_26241 0.5kb upstream 0.5kb upstream 6760   true Lsat_1_v8_lg_6: 32746946-32753705 Lactuca sativa
Lsat_1_v5_gn_6_26241 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 32746946-32747445 Lactuca sativa
Lsat_1_v5_gn_6_26241 0.5kb downstream 0.5kb downstream 6760   true Lsat_1_v8_lg_6: 32747446-32754205 Lactuca sativa
Lsat_1_v5_gn_6_26241 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 32753706-32754205 Lactuca sativa
Lsat_1_v5_gn_6_26241 1.0kb upstream 1.0kb upstream 7260   true Lsat_1_v8_lg_6: 32746446-32753705 Lactuca sativa
Lsat_1_v5_gn_6_26241 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 32746446-32747445 Lactuca sativa
Lsat_1_v5_gn_6_26241 1.0kb downstream 1.0kb downstream 7260   true Lsat_1_v8_lg_6: 32747446-32754705 Lactuca sativa
Lsat_1_v5_gn_6_26241 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 32753706-32754705 Lactuca sativa
Lsat_1_v5_gn_6_26241 2.0kb upstream 2.0kb upstream 8260   true Lsat_1_v8_lg_6: 32745446-32753705 Lactuca sativa
Lsat_1_v5_gn_6_26241 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 32745446-32747445 Lactuca sativa
Lsat_1_v5_gn_6_26241 2.0kb downstream 2.0kb downstream 8260   true Lsat_1_v8_lg_6: 32747446-32755705 Lactuca sativa
Lsat_1_v5_gn_6_26241 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 32753706-32755705 Lactuca sativa
Lsat_1_v5_gn_6_26241 5.0kb upstream 5.0kb upstream 11260   true Lsat_1_v8_lg_6: 32742446-32753705 Lactuca sativa
Lsat_1_v5_gn_6_26241 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 32742446-32747445 Lactuca sativa
Lsat_1_v5_gn_6_26241 5.0kb downstream 5.0kb downstream 11260   true Lsat_1_v8_lg_6: 32747446-32758705 Lactuca sativa
Lsat_1_v5_gn_6_26241 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 32753706-32758705 Lactuca sativa
Lsat_1_v5_gn_6_26241 10.0kb upstream 10.0kb upstream 16260   true Lsat_1_v8_lg_6: 32737446-32753705 Lactuca sativa
Lsat_1_v5_gn_6_26241 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 32737446-32747445 Lactuca sativa
Lsat_1_v5_gn_6_26241 10.0kb downstream 10.0kb downstream 16260   true Lsat_1_v8_lg_6: 32747446-32763705 Lactuca sativa
Lsat_1_v5_gn_6_26241 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 32753706-32763705 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469305 5263 Asterids View MSA
123748568 5271 Pentapetalae View MSA
122793340 5272 Eudicot View MSA
122047135 5273 Angiosperm View MSA
121347287 5274 Embryophyte View MSA
123428083 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain