Gene : Lsat_1_v5_gn_6_7620 L. sativa V8
Defline:  (1 of 1) PTHR30603//PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGC Genomic Order:  400
Name:  ? Lsat_1_v5_gn_6_7620 Secondary Identifier:  ? PAC:38938775
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_7620 0.5kb upstream 0.5kb upstream 3799   true Lsat_1_v8_lg_6: 17095338-17099136 Lactuca sativa
Lsat_1_v5_gn_6_7620 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 17098637-17099136 Lactuca sativa
Lsat_1_v5_gn_6_7620 0.5kb downstream 0.5kb downstream 3799   true Lsat_1_v8_lg_6: 17094838-17098636 Lactuca sativa
Lsat_1_v5_gn_6_7620 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 17094838-17095337 Lactuca sativa
Lsat_1_v5_gn_6_7620 1.0kb upstream 1.0kb upstream 4299   true Lsat_1_v8_lg_6: 17095338-17099636 Lactuca sativa
Lsat_1_v5_gn_6_7620 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 17098637-17099636 Lactuca sativa
Lsat_1_v5_gn_6_7620 1.0kb downstream 1.0kb downstream 4299   true Lsat_1_v8_lg_6: 17094338-17098636 Lactuca sativa
Lsat_1_v5_gn_6_7620 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 17094338-17095337 Lactuca sativa
Lsat_1_v5_gn_6_7620 2.0kb upstream 2.0kb upstream 5299   true Lsat_1_v8_lg_6: 17095338-17100636 Lactuca sativa
Lsat_1_v5_gn_6_7620 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 17098637-17100636 Lactuca sativa
Lsat_1_v5_gn_6_7620 2.0kb downstream 2.0kb downstream 5299   true Lsat_1_v8_lg_6: 17093338-17098636 Lactuca sativa
Lsat_1_v5_gn_6_7620 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 17093338-17095337 Lactuca sativa
Lsat_1_v5_gn_6_7620 5.0kb upstream 5.0kb upstream 8299   true Lsat_1_v8_lg_6: 17095338-17103636 Lactuca sativa
Lsat_1_v5_gn_6_7620 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 17098637-17103636 Lactuca sativa
Lsat_1_v5_gn_6_7620 5.0kb downstream 5.0kb downstream 8299   true Lsat_1_v8_lg_6: 17090338-17098636 Lactuca sativa
Lsat_1_v5_gn_6_7620 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 17090338-17095337 Lactuca sativa
Lsat_1_v5_gn_6_7620 10.0kb upstream 10.0kb upstream 13299   true Lsat_1_v8_lg_6: 17095338-17108636 Lactuca sativa
Lsat_1_v5_gn_6_7620 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 17098637-17108636 Lactuca sativa
Lsat_1_v5_gn_6_7620 10.0kb downstream 10.0kb downstream 13299   true Lsat_1_v8_lg_6: 17085338-17098636 Lactuca sativa
Lsat_1_v5_gn_6_7620 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 17085338-17095337 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473627 5263 Asterids View MSA
123740141 5271 Pentapetalae View MSA
122790910 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain