Gene : Carub.0005s1976 C. rubella v1.1
Defline:  (1 of 3) K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Genomic Order:  1976
Name:  ? Carub.0005s1976 Secondary Identifier:  ? PAC:39225870
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s1976 0.5kb upstream 0.5kb upstream 3951 true scaffold_5: 9866176-9870126 Capsella rubella
Carub.0005s1976 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9866176-9866675 Capsella rubella
Carub.0005s1976 0.5kb downstream 0.5kb downstream 3951 true scaffold_5: 9866676-9870626 Capsella rubella
Carub.0005s1976 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9870127-9870626 Capsella rubella
Carub.0005s1976 1.0kb upstream 1.0kb upstream 4451 true scaffold_5: 9865676-9870126 Capsella rubella
Carub.0005s1976 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9865676-9866675 Capsella rubella
Carub.0005s1976 1.0kb downstream 1.0kb downstream 4451 true scaffold_5: 9866676-9871126 Capsella rubella
Carub.0005s1976 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9870127-9871126 Capsella rubella
Carub.0005s1976 2.0kb upstream 2.0kb upstream 5451 true scaffold_5: 9864676-9870126 Capsella rubella
Carub.0005s1976 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9864676-9866675 Capsella rubella
Carub.0005s1976 2.0kb downstream 2.0kb downstream 5451 true scaffold_5: 9866676-9872126 Capsella rubella
Carub.0005s1976 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9870127-9872126 Capsella rubella
Carub.0005s1976 5.0kb upstream 5.0kb upstream 8451 true scaffold_5: 9861676-9870126 Capsella rubella
Carub.0005s1976 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9861676-9866675 Capsella rubella
Carub.0005s1976 5.0kb downstream 5.0kb downstream 8451 true scaffold_5: 9866676-9875126 Capsella rubella
Carub.0005s1976 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9870127-9875126 Capsella rubella
Carub.0005s1976 10.0kb upstream 10.0kb upstream 13451 true scaffold_5: 9856676-9870126 Capsella rubella
Carub.0005s1976 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9856676-9866675 Capsella rubella
Carub.0005s1976 10.0kb downstream 10.0kb downstream 13451 true scaffold_5: 9866676-9880126 Capsella rubella
Carub.0005s1976 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9870127-9880126 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368364 5261 Brassicaceae View MSA
123838879 5264 Brassicales-Malvales View MSA
124336663 5266 SBM View MSA
124250896 5268 Malvidae View MSA
124066929 5270 Rosid View MSA
123746983 5271 Pentapetalae View MSA
122795799 5272 Eudicot View MSA
122048605 5273 Angiosperm View MSA
121347913 5274 Embryophyte View MSA
123424841 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain