Gene : Carub.0005s2049 C. rubella v1.1
Defline:  (1 of 1) PTHR30603//PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGC Genomic Order:  2049
Name:  ? Carub.0005s2049 Secondary Identifier:  ? PAC:39223747
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0005s2049 0.5kb upstream 0.5kb upstream 3652 true scaffold_5: 10118458-10122109 Capsella rubella
Carub.0005s2049 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 10121610-10122109 Capsella rubella
Carub.0005s2049 0.5kb downstream 0.5kb downstream 3652 true scaffold_5: 10117958-10121609 Capsella rubella
Carub.0005s2049 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 10117958-10118457 Capsella rubella
Carub.0005s2049 1.0kb upstream 1.0kb upstream 4152 true scaffold_5: 10118458-10122609 Capsella rubella
Carub.0005s2049 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 10121610-10122609 Capsella rubella
Carub.0005s2049 1.0kb downstream 1.0kb downstream 4152 true scaffold_5: 10117458-10121609 Capsella rubella
Carub.0005s2049 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 10117458-10118457 Capsella rubella
Carub.0005s2049 2.0kb upstream 2.0kb upstream 5152 true scaffold_5: 10118458-10123609 Capsella rubella
Carub.0005s2049 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 10121610-10123609 Capsella rubella
Carub.0005s2049 2.0kb downstream 2.0kb downstream 5152 true scaffold_5: 10116458-10121609 Capsella rubella
Carub.0005s2049 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 10116458-10118457 Capsella rubella
Carub.0005s2049 5.0kb upstream 5.0kb upstream 8152 true scaffold_5: 10118458-10126609 Capsella rubella
Carub.0005s2049 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 10121610-10126609 Capsella rubella
Carub.0005s2049 5.0kb downstream 5.0kb downstream 8152 true scaffold_5: 10113458-10121609 Capsella rubella
Carub.0005s2049 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 10113458-10118457 Capsella rubella
Carub.0005s2049 10.0kb upstream 10.0kb upstream 13152 true scaffold_5: 10118458-10131609 Capsella rubella
Carub.0005s2049 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 10121610-10131609 Capsella rubella
Carub.0005s2049 10.0kb downstream 10.0kb downstream 13152 true scaffold_5: 10108458-10121609 Capsella rubella
Carub.0005s2049 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 10108458-10118457 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368214 5261 Brassicaceae View MSA
123835228 5264 Brassicales-Malvales View MSA
124339233 5266 SBM View MSA
124241002 5268 Malvidae View MSA
124066758 5270 Rosid View MSA
123740141 5271 Pentapetalae View MSA
122790910 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain