Gene : Carub.0001s3541 C. rubella v1.1
Defline:  (1 of 2) K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Genomic Order:  3541
Name:  ? Carub.0001s3541 Secondary Identifier:  ? PAC:39231676
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s3541 0.5kb upstream 0.5kb upstream 8650 true scaffold_1: 15433939-15442588 Capsella rubella
Carub.0001s3541 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 15433939-15434438 Capsella rubella
Carub.0001s3541 0.5kb downstream 0.5kb downstream 8650 true scaffold_1: 15434439-15443088 Capsella rubella
Carub.0001s3541 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 15442589-15443088 Capsella rubella
Carub.0001s3541 1.0kb upstream 1.0kb upstream 9150 true scaffold_1: 15433439-15442588 Capsella rubella
Carub.0001s3541 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 15433439-15434438 Capsella rubella
Carub.0001s3541 1.0kb downstream 1.0kb downstream 9150 true scaffold_1: 15434439-15443588 Capsella rubella
Carub.0001s3541 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 15442589-15443588 Capsella rubella
Carub.0001s3541 2.0kb upstream 2.0kb upstream 10150 true scaffold_1: 15432439-15442588 Capsella rubella
Carub.0001s3541 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 15432439-15434438 Capsella rubella
Carub.0001s3541 2.0kb downstream 2.0kb downstream 10150 true scaffold_1: 15434439-15444588 Capsella rubella
Carub.0001s3541 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 15442589-15444588 Capsella rubella
Carub.0001s3541 5.0kb upstream 5.0kb upstream 13150 true scaffold_1: 15429439-15442588 Capsella rubella
Carub.0001s3541 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 15429439-15434438 Capsella rubella
Carub.0001s3541 5.0kb downstream 5.0kb downstream 13150 true scaffold_1: 15434439-15447588 Capsella rubella
Carub.0001s3541 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 15442589-15447588 Capsella rubella
Carub.0001s3541 10.0kb upstream 10.0kb upstream 18150 true scaffold_1: 15424439-15442588 Capsella rubella
Carub.0001s3541 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 15424439-15434438 Capsella rubella
Carub.0001s3541 10.0kb downstream 10.0kb downstream 18150 true scaffold_1: 15434439-15452588 Capsella rubella
Carub.0001s3541 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 15442589-15452588 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369990 5261 Brassicaceae View MSA
123833261 5264 Brassicales-Malvales View MSA
124350804 5266 SBM View MSA
124245383 5268 Malvidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain