Gene : Carub.0006s3421 C. rubella v1.1
Defline:  (1 of 2) K11087 - small nuclear ribonucleoprotein D1 (SNRPD1, SMD1) Genomic Order:  3421
Name:  ? Carub.0006s3421 Secondary Identifier:  ? PAC:39247159
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0006s3421 0.5kb upstream 0.5kb upstream 2368 true scaffold_6: 15398322-15400689 Capsella rubella
Carub.0006s3421 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 15400190-15400689 Capsella rubella
Carub.0006s3421 0.5kb downstream 0.5kb downstream 2368 true scaffold_6: 15397822-15400189 Capsella rubella
Carub.0006s3421 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 15397822-15398321 Capsella rubella
Carub.0006s3421 1.0kb upstream 1.0kb upstream 2868 true scaffold_6: 15398322-15401189 Capsella rubella
Carub.0006s3421 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 15400190-15401189 Capsella rubella
Carub.0006s3421 1.0kb downstream 1.0kb downstream 2868 true scaffold_6: 15397322-15400189 Capsella rubella
Carub.0006s3421 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 15397322-15398321 Capsella rubella
Carub.0006s3421 2.0kb upstream 2.0kb upstream 3868 true scaffold_6: 15398322-15402189 Capsella rubella
Carub.0006s3421 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 15400190-15402189 Capsella rubella
Carub.0006s3421 2.0kb downstream 2.0kb downstream 3868 true scaffold_6: 15396322-15400189 Capsella rubella
Carub.0006s3421 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 15396322-15398321 Capsella rubella
Carub.0006s3421 5.0kb upstream 5.0kb upstream 6868 true scaffold_6: 15398322-15405189 Capsella rubella
Carub.0006s3421 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 15400190-15405189 Capsella rubella
Carub.0006s3421 5.0kb downstream 5.0kb downstream 6868 true scaffold_6: 15393322-15400189 Capsella rubella
Carub.0006s3421 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 15393322-15398321 Capsella rubella
Carub.0006s3421 10.0kb upstream 10.0kb upstream 11868 true scaffold_6: 15398322-15410189 Capsella rubella
Carub.0006s3421 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 15400190-15410189 Capsella rubella
Carub.0006s3421 10.0kb downstream 10.0kb downstream 11868 true scaffold_6: 15388322-15400189 Capsella rubella
Carub.0006s3421 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 15388322-15398321 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362948 5261 Brassicaceae View MSA
123839137 5264 Brassicales-Malvales View MSA
124351091 5266 SBM View MSA
124247132 5268 Malvidae View MSA
124060560 5270 Rosid View MSA
123750770 5271 Pentapetalae View MSA
122792948 5272 Eudicot View MSA
122045867 5273 Angiosperm View MSA
121351003 5274 Embryophyte View MSA
123426098 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain