Gene : Carub.0003s1955 C. rubella v1.1
Defline:  (1 of 2) K12821 - pre-mRNA-processing factor 40 (PRPF40, PRP40) Genomic Order:  1955
Name:  ? Carub.0003s1955 Secondary Identifier:  ? PAC:39241508
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0003s1955 0.5kb upstream 0.5kb upstream 9980 true scaffold_3: 7001099-7011078 Capsella rubella
Carub.0003s1955 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 7010579-7011078 Capsella rubella
Carub.0003s1955 0.5kb downstream 0.5kb downstream 9980 true scaffold_3: 7000599-7010578 Capsella rubella
Carub.0003s1955 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 7000599-7001098 Capsella rubella
Carub.0003s1955 1.0kb upstream 1.0kb upstream 10480 true scaffold_3: 7001099-7011578 Capsella rubella
Carub.0003s1955 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 7010579-7011578 Capsella rubella
Carub.0003s1955 1.0kb downstream 1.0kb downstream 10480 true scaffold_3: 7000099-7010578 Capsella rubella
Carub.0003s1955 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 7000099-7001098 Capsella rubella
Carub.0003s1955 2.0kb upstream 2.0kb upstream 11480 true scaffold_3: 7001099-7012578 Capsella rubella
Carub.0003s1955 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 7010579-7012578 Capsella rubella
Carub.0003s1955 2.0kb downstream 2.0kb downstream 11480 true scaffold_3: 6999099-7010578 Capsella rubella
Carub.0003s1955 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 6999099-7001098 Capsella rubella
Carub.0003s1955 5.0kb upstream 5.0kb upstream 14480 true scaffold_3: 7001099-7015578 Capsella rubella
Carub.0003s1955 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 7010579-7015578 Capsella rubella
Carub.0003s1955 5.0kb downstream 5.0kb downstream 14480 true scaffold_3: 6996099-7010578 Capsella rubella
Carub.0003s1955 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 6996099-7001098 Capsella rubella
Carub.0003s1955 10.0kb upstream 10.0kb upstream 19480 true scaffold_3: 7001099-7020578 Capsella rubella
Carub.0003s1955 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 7010579-7020578 Capsella rubella
Carub.0003s1955 10.0kb downstream 10.0kb downstream 19480 true scaffold_3: 6991099-7010578 Capsella rubella
Carub.0003s1955 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 6991099-7001098 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360518 5261 Brassicaceae View MSA
123840209 5264 Brassicales-Malvales View MSA
124350804 5266 SBM View MSA
124245383 5268 Malvidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain