Gene : Cagra.0389s0013 C. grandiflora v1.1
Defline:  (1 of 3) PTHR24423:SF563 - PHYTOCHROME E Genomic Order:  13
Name:  ? Cagra.0389s0013 Secondary Identifier:  ? PAC:28916356
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0389s0013 0.5kb upstream 0.5kb upstream 5063 true Scaffold389: 48378-53440 Capsella grandiflora
Cagra.0389s0013 0.5kb upstream 0.5kb upstream 500 false Scaffold389: 48378-48877 Capsella grandiflora
Cagra.0389s0013 0.5kb downstream 0.5kb downstream 5063 true Scaffold389: 48878-53940 Capsella grandiflora
Cagra.0389s0013 0.5kb downstream 0.5kb downstream 500 false Scaffold389: 53441-53940 Capsella grandiflora
Cagra.0389s0013 1.0kb upstream 1.0kb upstream 5563 true Scaffold389: 47878-53440 Capsella grandiflora
Cagra.0389s0013 1.0kb upstream 1.0kb upstream 1000 false Scaffold389: 47878-48877 Capsella grandiflora
Cagra.0389s0013 1.0kb downstream 1.0kb downstream 5563 true Scaffold389: 48878-54440 Capsella grandiflora
Cagra.0389s0013 1.0kb downstream 1.0kb downstream 1000 false Scaffold389: 53441-54440 Capsella grandiflora
Cagra.0389s0013 2.0kb upstream 2.0kb upstream 6563 true Scaffold389: 46878-53440 Capsella grandiflora
Cagra.0389s0013 2.0kb upstream 2.0kb upstream 2000 false Scaffold389: 46878-48877 Capsella grandiflora
Cagra.0389s0013 2.0kb downstream 2.0kb downstream 6563 true Scaffold389: 48878-55440 Capsella grandiflora
Cagra.0389s0013 2.0kb downstream 2.0kb downstream 2000 false Scaffold389: 53441-55440 Capsella grandiflora
Cagra.0389s0013 5.0kb upstream 5.0kb upstream 9563 true Scaffold389: 43878-53440 Capsella grandiflora
Cagra.0389s0013 5.0kb upstream 5.0kb upstream 5000 false Scaffold389: 43878-48877 Capsella grandiflora
Cagra.0389s0013 5.0kb downstream 5.0kb downstream 9563 true Scaffold389: 48878-58440 Capsella grandiflora
Cagra.0389s0013 5.0kb downstream 5.0kb downstream 5000 false Scaffold389: 53441-58440 Capsella grandiflora
Cagra.0389s0013 10.0kb upstream 10.0kb upstream 14563 true Scaffold389: 38878-53440 Capsella grandiflora
Cagra.0389s0013 10.0kb upstream 10.0kb upstream 10000 false Scaffold389: 38878-48877 Capsella grandiflora
Cagra.0389s0013 10.0kb downstream 10.0kb downstream 9652 true Scaffold389: 48878-58529 Capsella grandiflora
Cagra.0389s0013 10.0kb downstream 10.0kb downstream 5089 false Scaffold389: 53441-58529 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377563 5261 Brassicaceae View MSA
123833552 5264 Brassicales-Malvales View MSA
124343698 5266 SBM View MSA
124238198 5268 Malvidae View MSA
124065248 5270 Rosid View MSA
123737518 5271 Pentapetalae View MSA
122797861 5272 Eudicot View MSA
122046644 5273 Angiosperm View MSA
121350342 5274 Embryophyte View MSA
123381687 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain