Gene : Cagra.6943s0018 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 Genomic Order:  18
Name:  ? Cagra.6943s0018 Secondary Identifier:  ? PAC:28894556
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.6943s0018 0.5kb upstream 0.5kb upstream 8836 true Scaffold6943: 59686-68521 Capsella grandiflora
Cagra.6943s0018 0.5kb upstream 0.5kb upstream 500 false Scaffold6943: 59686-60185 Capsella grandiflora
Cagra.6943s0018 0.5kb downstream 0.5kb downstream 8836 true Scaffold6943: 60186-69021 Capsella grandiflora
Cagra.6943s0018 0.5kb downstream 0.5kb downstream 500 false Scaffold6943: 68522-69021 Capsella grandiflora
Cagra.6943s0018 1.0kb upstream 1.0kb upstream 9336 true Scaffold6943: 59186-68521 Capsella grandiflora
Cagra.6943s0018 1.0kb upstream 1.0kb upstream 1000 false Scaffold6943: 59186-60185 Capsella grandiflora
Cagra.6943s0018 1.0kb downstream 1.0kb downstream 9336 true Scaffold6943: 60186-69521 Capsella grandiflora
Cagra.6943s0018 1.0kb downstream 1.0kb downstream 1000 false Scaffold6943: 68522-69521 Capsella grandiflora
Cagra.6943s0018 2.0kb upstream 2.0kb upstream 10336 true Scaffold6943: 58186-68521 Capsella grandiflora
Cagra.6943s0018 2.0kb upstream 2.0kb upstream 2000 false Scaffold6943: 58186-60185 Capsella grandiflora
Cagra.6943s0018 2.0kb downstream 2.0kb downstream 10336 true Scaffold6943: 60186-70521 Capsella grandiflora
Cagra.6943s0018 2.0kb downstream 2.0kb downstream 2000 false Scaffold6943: 68522-70521 Capsella grandiflora
Cagra.6943s0018 5.0kb upstream 5.0kb upstream 13336 true Scaffold6943: 55186-68521 Capsella grandiflora
Cagra.6943s0018 5.0kb upstream 5.0kb upstream 5000 false Scaffold6943: 55186-60185 Capsella grandiflora
Cagra.6943s0018 5.0kb downstream 5.0kb downstream 13336 true Scaffold6943: 60186-73521 Capsella grandiflora
Cagra.6943s0018 5.0kb downstream 5.0kb downstream 5000 false Scaffold6943: 68522-73521 Capsella grandiflora
Cagra.6943s0018 10.0kb upstream 10.0kb upstream 18336 true Scaffold6943: 50186-68521 Capsella grandiflora
Cagra.6943s0018 10.0kb upstream 10.0kb upstream 10000 false Scaffold6943: 50186-60185 Capsella grandiflora
Cagra.6943s0018 10.0kb downstream 10.0kb downstream 18336 true Scaffold6943: 60186-78521 Capsella grandiflora
Cagra.6943s0018 10.0kb downstream 10.0kb downstream 10000 false Scaffold6943: 68522-78521 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360518 5261 Brassicaceae View MSA
123840209 5264 Brassicales-Malvales View MSA
124350804 5266 SBM View MSA
124245383 5268 Malvidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain