Gene : Cagra.18800s0002 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11864 - PRE-MRNA-PROCESSING PROTEIN PRP40 Genomic Order:  2
Name:  ? Cagra.18800s0002 Secondary Identifier:  ? PAC:28893825
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.18800s0002 0.5kb upstream 0.5kb upstream 8021 true Scaffold18800: 1129-9149 Capsella grandiflora
Cagra.18800s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold18800: 8650-9149 Capsella grandiflora
Cagra.18800s0002 0.5kb downstream 0.5kb downstream 8021 true Scaffold18800: 629-8649 Capsella grandiflora
Cagra.18800s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold18800: 629-1128 Capsella grandiflora
Cagra.18800s0002 1.0kb upstream 1.0kb upstream 8521 true Scaffold18800: 1129-9649 Capsella grandiflora
Cagra.18800s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold18800: 8650-9649 Capsella grandiflora
Cagra.18800s0002 1.0kb downstream 1.0kb downstream 8521 true Scaffold18800: 129-8649 Capsella grandiflora
Cagra.18800s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold18800: 129-1128 Capsella grandiflora
Cagra.18800s0002 2.0kb upstream 2.0kb upstream 9521 true Scaffold18800: 1129-10649 Capsella grandiflora
Cagra.18800s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold18800: 8650-10649 Capsella grandiflora
Cagra.18800s0002 2.0kb downstream 2.0kb downstream 8649 true Scaffold18800: 1-8649 Capsella grandiflora
Cagra.18800s0002 2.0kb downstream 2.0kb downstream 1128 false Scaffold18800: 1-1128 Capsella grandiflora
Cagra.18800s0002 5.0kb upstream 5.0kb upstream 12521 true Scaffold18800: 1129-13649 Capsella grandiflora
Cagra.18800s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold18800: 8650-13649 Capsella grandiflora
Cagra.18800s0002 5.0kb downstream 5.0kb downstream 8649 true Scaffold18800: 1-8649 Capsella grandiflora
Cagra.18800s0002 5.0kb downstream 5.0kb downstream 1128 false Scaffold18800: 1-1128 Capsella grandiflora
Cagra.18800s0002 10.0kb upstream 10.0kb upstream 17521 true Scaffold18800: 1129-18649 Capsella grandiflora
Cagra.18800s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold18800: 8650-18649 Capsella grandiflora
Cagra.18800s0002 10.0kb downstream 10.0kb downstream 8649 true Scaffold18800: 1-8649 Capsella grandiflora
Cagra.18800s0002 10.0kb downstream 10.0kb downstream 1128 false Scaffold18800: 1-1128 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369990 5261 Brassicaceae View MSA
123833261 5264 Brassicales-Malvales View MSA
124350804 5266 SBM View MSA
124245383 5268 Malvidae View MSA
124060501 5270 Rosid View MSA
123741058 5271 Pentapetalae View MSA
122797131 5272 Eudicot View MSA
122049454 5273 Angiosperm View MSA
121347556 5274 Embryophyte View MSA
123423988 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain