Gene : Brara.F00534 B. rapa FPsc v1.3
Defline:  (1 of 11) PTHR30603 - RNA POLYMERASE SIGMA FACTOR RPO Genomic Order:  534
Name:  ? Brara.F00534 Secondary Identifier:  ? PAC:30631331
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Brara.F00534 0.5kb upstream 0.5kb upstream 4759 true A06: 3189557-3194315 Brassica rapa FPsc
Brara.F00534 0.5kb upstream 0.5kb upstream 500 false A06: 3189557-3190056 Brassica rapa FPsc
Brara.F00534 0.5kb downstream 0.5kb downstream 4759 true A06: 3190057-3194815 Brassica rapa FPsc
Brara.F00534 0.5kb downstream 0.5kb downstream 500 false A06: 3194316-3194815 Brassica rapa FPsc
Brara.F00534 1.0kb upstream 1.0kb upstream 5259 true A06: 3189057-3194315 Brassica rapa FPsc
Brara.F00534 1.0kb upstream 1.0kb upstream 1000 false A06: 3189057-3190056 Brassica rapa FPsc
Brara.F00534 1.0kb downstream 1.0kb downstream 5259 true A06: 3190057-3195315 Brassica rapa FPsc
Brara.F00534 1.0kb downstream 1.0kb downstream 1000 false A06: 3194316-3195315 Brassica rapa FPsc
Brara.F00534 2.0kb upstream 2.0kb upstream 6259 true A06: 3188057-3194315 Brassica rapa FPsc
Brara.F00534 2.0kb upstream 2.0kb upstream 2000 false A06: 3188057-3190056 Brassica rapa FPsc
Brara.F00534 2.0kb downstream 2.0kb downstream 6259 true A06: 3190057-3196315 Brassica rapa FPsc
Brara.F00534 2.0kb downstream 2.0kb downstream 2000 false A06: 3194316-3196315 Brassica rapa FPsc
Brara.F00534 5.0kb upstream 5.0kb upstream 9259 true A06: 3185057-3194315 Brassica rapa FPsc
Brara.F00534 5.0kb upstream 5.0kb upstream 5000 false A06: 3185057-3190056 Brassica rapa FPsc
Brara.F00534 5.0kb downstream 5.0kb downstream 9259 true A06: 3190057-3199315 Brassica rapa FPsc
Brara.F00534 5.0kb downstream 5.0kb downstream 5000 false A06: 3194316-3199315 Brassica rapa FPsc
Brara.F00534 10.0kb upstream 10.0kb upstream 14259 true A06: 3180057-3194315 Brassica rapa FPsc
Brara.F00534 10.0kb upstream 10.0kb upstream 10000 false A06: 3180057-3190056 Brassica rapa FPsc
Brara.F00534 10.0kb downstream 10.0kb downstream 14259 true A06: 3190057-3204315 Brassica rapa FPsc
Brara.F00534 10.0kb downstream 10.0kb downstream 10000 false A06: 3194316-3204315 Brassica rapa FPsc

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122350903 5261 Brassicaceae Singleton cluster - no MSA
123789857 5264 Brassicales-Malvales Singleton cluster - no MSA
124287839 5266 SBM Singleton cluster - no MSA
124251670 5268 Malvidae View MSA
124065306 5270 Rosid View MSA
123751307 5271 Pentapetalae View MSA
122790419 5272 Eudicot View MSA
122046988 5273 Angiosperm View MSA
121346903 5274 Embryophyte View MSA
123428711 5275 Viridiplantae View MSA

0 Rna Seq Expressions

1 Strain

DB identifier