Gene : Bostr.27895s0028 B. stricta v1.2
Defline:  (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  28
Name:  ? Bostr.27895s0028 Secondary Identifier:  ? PAC:30650449
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20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.27895s0028 0.5kb upstream 0.5kb upstream 1145 true Scaffold27895: 275274-276418 Boechera stricta
Bostr.27895s0028 0.5kb upstream 0.5kb upstream 500 false Scaffold27895: 275274-275773 Boechera stricta
Bostr.27895s0028 0.5kb downstream 0.5kb downstream 1145 true Scaffold27895: 275774-276918 Boechera stricta
Bostr.27895s0028 0.5kb downstream 0.5kb downstream 500 false Scaffold27895: 276419-276918 Boechera stricta
Bostr.27895s0028 1.0kb upstream 1.0kb upstream 1645 true Scaffold27895: 274774-276418 Boechera stricta
Bostr.27895s0028 1.0kb upstream 1.0kb upstream 1000 false Scaffold27895: 274774-275773 Boechera stricta
Bostr.27895s0028 1.0kb downstream 1.0kb downstream 1645 true Scaffold27895: 275774-277418 Boechera stricta
Bostr.27895s0028 1.0kb downstream 1.0kb downstream 1000 false Scaffold27895: 276419-277418 Boechera stricta
Bostr.27895s0028 2.0kb upstream 2.0kb upstream 2645 true Scaffold27895: 273774-276418 Boechera stricta
Bostr.27895s0028 2.0kb upstream 2.0kb upstream 2000 false Scaffold27895: 273774-275773 Boechera stricta
Bostr.27895s0028 2.0kb downstream 2.0kb downstream 2645 true Scaffold27895: 275774-278418 Boechera stricta
Bostr.27895s0028 2.0kb downstream 2.0kb downstream 2000 false Scaffold27895: 276419-278418 Boechera stricta
Bostr.27895s0028 5.0kb upstream 5.0kb upstream 5645 true Scaffold27895: 270774-276418 Boechera stricta
Bostr.27895s0028 5.0kb upstream 5.0kb upstream 5000 false Scaffold27895: 270774-275773 Boechera stricta
Bostr.27895s0028 5.0kb downstream 5.0kb downstream 5645 true Scaffold27895: 275774-281418 Boechera stricta
Bostr.27895s0028 5.0kb downstream 5.0kb downstream 5000 false Scaffold27895: 276419-281418 Boechera stricta
Bostr.27895s0028 10.0kb upstream 10.0kb upstream 10645 true Scaffold27895: 265774-276418 Boechera stricta
Bostr.27895s0028 10.0kb upstream 10.0kb upstream 10000 false Scaffold27895: 265774-275773 Boechera stricta
Bostr.27895s0028 10.0kb downstream 10.0kb downstream 10645 true Scaffold27895: 275774-286418 Boechera stricta
Bostr.27895s0028 10.0kb downstream 10.0kb downstream 10000 false Scaffold27895: 276419-286418 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122342962 5261 Brassicaceae View MSA
123783276 5264 Brassicales-Malvales View MSA
124350615 5266 SBM View MSA
124253184 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain