Protein Family : PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 123783276

Method ID:  5264 Method Name:  Brassicales-Malvales
Sequence Alignment:  View MSA Member Count:  28

28 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
Bostr.27895s0028 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 645   Scaffold27895: 275774-276418
Bostr.26959s0302 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 1935   Scaffold26959: 2660144-2662078
Bostr.26959s0315 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 1049   Scaffold26959: 2798881-2799929
Bostr.27895s0081 (1 of 18) PTHR11439 - GAG-POL-RELATED RETROTRANSPOSON B. stricta v1.2 575   Scaffold27895: 813570-814144
Bostr.28160s0001 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 621   Scaffold28160: 90-710
Bostr.2983s0182 (1 of 10) 2.7.13.3 - Histidine kinase / Protein kinase (histidine) B. stricta v1.2 666   Scaffold2983: 1171877-1172542
Bostr.3279s0037 (1 of 5) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON B. stricta v1.2 1675   Scaffold3279: 425637-427311
Bostr.3148s0244 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 666   Scaffold3148: 2123655-2124320
Bostr.3148s0254 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 767   Scaffold3148: 2251191-2251957
Bostr.3359s0107 (1 of 18) PTHR11439 - GAG-POL-RELATED RETROTRANSPOSON B. stricta v1.2 712   Scaffold3359: 1132438-1133149
Bostr.5342s0015 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 802   Scaffold5342: 160362-161163
Bostr.0556s0755 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 1082   Scaffold556: 4811505-4812586
Bostr.2066s0001   B. stricta v1.2 612   Scaffold2066: 3530-4141
Bostr.1774s0018 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 803   Scaffold1774: 206127-206929
Bostr.9600s0020 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 802   Scaffold9600: 108191-108992
Bostr.12302s0038 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 702   Scaffold12302: 668563-669264
Bostr.13083s0003   B. stricta v1.2 625   Scaffold13083: 15171-15795
Bostr.12302s0117 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 624   Scaffold12302: 1703667-1704290
Bostr.12645s0003 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 1708   Scaffold12645: 27573-29280
Bostr.15412s0001 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 2356   Scaffold15412: 10556-12911
Bostr.13671s0447 (1 of 5) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON B. stricta v1.2 774   Scaffold13671: 2370560-2371333
Bostr.18351s0363 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 10089   Scaffold18351: 2940078-2950166
Bostr.16335s0024 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 577   Scaffold16335: 170620-171196
Bostr.25517s0003 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 1932   Scaffold25517: 263142-265073
Bostr.26675s0018 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 1505   Scaffold26675: 113405-114909
Bostr.14729s0001 (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) B. stricta v1.2 573   Scaffold14729: 52-624
Bostr.25463s0221 (1 of 5) PTHR11439//PTHR11439:SF185 - GAG-POL-RELATED RETROTRANSPOSON B. stricta v1.2 483   Scaffold25463: 1878225-1878707
Bostr.26527s0021 (1 of 18) PTHR11439 - GAG-POL-RELATED RETROTRANSPOSON B. stricta v1.2 576   Scaffold26527: 153945-154520

28 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Bostr.27895s0081.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.3148s0254.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.2983s0182.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.12302s0117.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.26675s0018.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.26959s0302.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.26959s0315.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.18351s0363.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.2066s0001.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.9600s0020.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.5342s0015.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.28160s0001.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.12645s0003.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.26527s0021.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.16335s0024.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.13083s0003.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.27895s0028.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.13671s0447.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.0556s0755.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.12302s0038.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.1774s0018.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.25463s0221.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.3359s0107.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.15412s0001.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.3279s0037.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.25517s0003.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.3148s0244.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales
Bostr.14729s0001.1.p B. stricta v1.2 123783276 PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) 28 5264 Brassicales-Malvales