Gene : Bostr.12645s0003 B. stricta v1.2
Defline:  (1 of 31) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  3
Name:  ? Bostr.12645s0003 Secondary Identifier:  ? PAC:30669043
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bostr.12645s0003 0.5kb upstream 0.5kb upstream 2208 true Scaffold12645: 27573-29780 Boechera stricta
Bostr.12645s0003 0.5kb upstream 0.5kb upstream 500 false Scaffold12645: 29281-29780 Boechera stricta
Bostr.12645s0003 0.5kb downstream 0.5kb downstream 2208 true Scaffold12645: 27073-29280 Boechera stricta
Bostr.12645s0003 0.5kb downstream 0.5kb downstream 500 false Scaffold12645: 27073-27572 Boechera stricta
Bostr.12645s0003 1.0kb upstream 1.0kb upstream 2708 true Scaffold12645: 27573-30280 Boechera stricta
Bostr.12645s0003 1.0kb upstream 1.0kb upstream 1000 false Scaffold12645: 29281-30280 Boechera stricta
Bostr.12645s0003 1.0kb downstream 1.0kb downstream 2708 true Scaffold12645: 26573-29280 Boechera stricta
Bostr.12645s0003 1.0kb downstream 1.0kb downstream 1000 false Scaffold12645: 26573-27572 Boechera stricta
Bostr.12645s0003 2.0kb upstream 2.0kb upstream 3708 true Scaffold12645: 27573-31280 Boechera stricta
Bostr.12645s0003 2.0kb upstream 2.0kb upstream 2000 false Scaffold12645: 29281-31280 Boechera stricta
Bostr.12645s0003 2.0kb downstream 2.0kb downstream 3708 true Scaffold12645: 25573-29280 Boechera stricta
Bostr.12645s0003 2.0kb downstream 2.0kb downstream 2000 false Scaffold12645: 25573-27572 Boechera stricta
Bostr.12645s0003 5.0kb upstream 5.0kb upstream 6708 true Scaffold12645: 27573-34280 Boechera stricta
Bostr.12645s0003 5.0kb upstream 5.0kb upstream 5000 false Scaffold12645: 29281-34280 Boechera stricta
Bostr.12645s0003 5.0kb downstream 5.0kb downstream 6708 true Scaffold12645: 22573-29280 Boechera stricta
Bostr.12645s0003 5.0kb downstream 5.0kb downstream 5000 false Scaffold12645: 22573-27572 Boechera stricta
Bostr.12645s0003 10.0kb upstream 10.0kb upstream 11708 true Scaffold12645: 27573-39280 Boechera stricta
Bostr.12645s0003 10.0kb upstream 10.0kb upstream 10000 false Scaffold12645: 29281-39280 Boechera stricta
Bostr.12645s0003 10.0kb downstream 10.0kb downstream 11708 true Scaffold12645: 17573-29280 Boechera stricta
Bostr.12645s0003 10.0kb downstream 10.0kb downstream 10000 false Scaffold12645: 17573-27572 Boechera stricta

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122342962 5261 Brassicaceae View MSA
123783276 5264 Brassicales-Malvales View MSA
124350615 5266 SBM View MSA
124253184 5268 Malvidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain